Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 CYP2T1P-201ENST00000432607 1285 ntBASIC13.65□□□□□ -0.22
SMKR1H3BMG3 CNN2P6-201ENST00000439038 900 ntBASIC13.65□□□□□ -0.22
SMKR1H3BMG3 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 AC084018.2-201ENST00000613093 2607 ntBASIC13.65□□□□□ -0.22
SMKR1H3BMG3 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
SMKR1H3BMG3 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 DBI-210ENST00000542275 757 ntTSL 5 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 AC069236.1-201ENST00000604339 616 ntBASIC13.64□□□□□ -0.23
SMKR1H3BMG3 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 AC008694.1-202ENST00000636953 945 ntBASIC13.64□□□□□ -0.23
SMKR1H3BMG3 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 AC012317.2-201ENST00000623305 2251 ntBASIC13.64□□□□□ -0.23
SMKR1H3BMG3 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SMKR1H3BMG3 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SMKR1H3BMG3 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms