Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.89■□□□□ 0.93
COL4A3BPQ9Y5P4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A3BPQ9Y5P4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A3BPQ9Y5P4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A3BPQ9Y5P4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A3BPQ9Y5P4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A3BPQ9Y5P4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A3BPQ9Y5P4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 WWOX-216ENST00000569818 525 ntBASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
COL4A3BPQ9Y5P4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 AC068587.9-201ENST00000641814 219 ntBASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 AC093525.10-201ENST00000625130 1569 ntBASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A3BPQ9Y5P4 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 ARMC10P1-201ENST00000313754 855 ntBASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 RNF152P1-201ENST00000397754 604 ntBASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 AC063952.2-201ENST00000498792 1227 ntBASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 NTF6B-201ENST00000591913 560 ntBASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 AL031598.1-201ENST00000561511 1773 ntBASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 GPAT2P1-201ENST00000444924 1672 ntBASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 HEIH-201ENST00000623091 1652 ntBASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A3BPQ9Y5P4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 AC022616.7-201ENST00000525383 220 ntBASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A3BPQ9Y5P4 AC011558.1-201ENST00000623459 338 ntBASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms