Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 AC104581.1-202ENST00000635932 2618 ntBASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 ECEL1P2-202ENST00000465689 757 ntBASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 AC128688.1-201ENST00000487626 519 ntBASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 MIR3180-5-201ENST00000583743 153 ntBASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 AC012306.2-201ENST00000609350 630 ntBASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 AC097493.4-201ENST00000641197 219 ntBASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 AC036111.1-201ENST00000533973 1582 ntBASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 LINC01568-207ENST00000641790 1380 ntBASIC17.66■□□□□ 0.42
ATG4BQ9Y4P1 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 FAM87A-204ENST00000613235 858 ntBASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.65■□□□□ 0.42
ATG4BQ9Y4P1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
ATG4BQ9Y4P1 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
ATG4BQ9Y4P1 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
ATG4BQ9Y4P1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
ATG4BQ9Y4P1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 AC005082.1-201ENST00000413042 2259 ntBASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 AC126763.1-201ENST00000552015 2118 ntBASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 CR769767.2-201ENST00000622735 460 ntBASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.64■□□□□ 0.41
ATG4BQ9Y4P1 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.63■□□□□ 0.41
ATG4BQ9Y4P1 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.63■□□□□ 0.41
ATG4BQ9Y4P1 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4BQ9Y4P1 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4BQ9Y4P1 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4BQ9Y4P1 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms