Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 HOMER2P1-201ENST00000455653 964 ntBASIC18.81■□□□□ 0.6
LHX3Q9UBR4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 NTF6B-201ENST00000591913 560 ntBASIC18.81■□□□□ 0.6
LHX3Q9UBR4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 AC010240.3-201ENST00000607688 395 ntBASIC18.81■□□□□ 0.6
LHX3Q9UBR4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 STARP1-201ENST00000397973 869 ntBASIC18.8■□□□□ 0.6
LHX3Q9UBR4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 AC092647.4-201ENST00000457211 535 ntBASIC18.8■□□□□ 0.6
LHX3Q9UBR4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 MIR3917-201ENST00000580971 93 ntBASIC18.8■□□□□ 0.6
LHX3Q9UBR4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 AL157888.1-201ENST00000631930 593 ntBASIC18.8■□□□□ 0.6
LHX3Q9UBR4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 AC087289.5-201ENST00000586076 3175 ntBASIC18.8■□□□□ 0.6
LHX3Q9UBR4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.8■□□□□ 0.6
LHX3Q9UBR4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 RASA4DP-201ENST00000460726 1199 ntBASIC18.79■□□□□ 0.6
LHX3Q9UBR4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 AL590326.2-201ENST00000625139 305 ntBASIC18.79■□□□□ 0.6
LHX3Q9UBR4 MYC-208ENST00000641036 567 ntBASIC18.79■□□□□ 0.6
LHX3Q9UBR4 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX3Q9UBR4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 AC112777.1-201ENST00000540175 1423 ntBASIC18.78■□□□□ 0.6
LHX3Q9UBR4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 AP000593.1-201ENST00000393668 712 ntBASIC18.78■□□□□ 0.6
LHX3Q9UBR4 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.78■□□□□ 0.6
LHX3Q9UBR4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 KRT18P35-201ENST00000510488 1269 ntBASIC18.78■□□□□ 0.6
LHX3Q9UBR4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LHX3Q9UBR4 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms