Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 AC036111.1-201ENST00000533973 1582 ntBASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 KRT18P57-201ENST00000443599 1254 ntBASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CUEDC1Q9NWM3 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 AL109659.2-201ENST00000606809 1674 ntBASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 KRT8P45-201ENST00000414328 1447 ntBASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 AC073508.3-201ENST00000619697 1419 ntBASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CUEDC1Q9NWM3 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 CR769767.2-201ENST00000622735 460 ntBASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 AL031598.1-201ENST00000561511 1773 ntBASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 AC093525.10-201ENST00000625130 1569 ntBASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.03■□□□□ 0.48
CUEDC1Q9NWM3 AL357033.4-201ENST00000617703 1807 ntBASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 HMGA1P5-201ENST00000412453 271 ntBASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 SLC25A3P1-201ENST00000443844 931 ntBASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CUEDC1Q9NWM3 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
CUEDC1Q9NWM3 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
CUEDC1Q9NWM3 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.02■□□□□ 0.47
CUEDC1Q9NWM3 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CUEDC1Q9NWM3 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CUEDC1Q9NWM3 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms