Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 SLC25A1P2-201ENST00000430693 912 ntBASIC18.64■□□□□ 0.57
TREX1Q9NSU2 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
TREX1Q9NSU2 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 AL390955.1-201ENST00000428694 934 ntBASIC18.63■□□□□ 0.57
TREX1Q9NSU2 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 AL355075.4-201ENST00000554988 638 ntBASIC18.63■□□□□ 0.57
TREX1Q9NSU2 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 AL353719.1-201ENST00000566847 864 ntBASIC18.63■□□□□ 0.57
TREX1Q9NSU2 MIR3180-5-201ENST00000583743 153 ntBASIC18.63■□□□□ 0.57
TREX1Q9NSU2 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TREX1Q9NSU2 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 AC092338.2-201ENST00000568827 1415 ntBASIC18.62■□□□□ 0.57
TREX1Q9NSU2 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 AC034236.2-201ENST00000606662 1610 ntBASIC18.62■□□□□ 0.57
TREX1Q9NSU2 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 AC007613.1-201ENST00000572811 2597 ntBASIC18.62■□□□□ 0.57
TREX1Q9NSU2 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TREX1Q9NSU2 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 KRT17P2-201ENST00000300992 1314 ntBASIC18.61■□□□□ 0.57
TREX1Q9NSU2 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 AP000593.1-201ENST00000393668 712 ntBASIC18.61■□□□□ 0.57
TREX1Q9NSU2 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 TSPY17P-201ENST00000450329 467 ntBASIC18.61■□□□□ 0.57
TREX1Q9NSU2 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 AP003041.3-201ENST00000527151 707 ntBASIC18.61■□□□□ 0.57
TREX1Q9NSU2 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 MIR4497-201ENST00000583208 89 ntBASIC18.61■□□□□ 0.57
TREX1Q9NSU2 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TREX1Q9NSU2 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms