Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL691432.3-201ENST00000621860 400 ntBASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 AC093484.2-201ENST00000580996 2166 ntBASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 MCCD1P1-208ENST00000445732 328 ntBASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 MIR3180-5-201ENST00000583743 153 ntBASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TM9SF3Q9HD45 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TM9SF3Q9HD45 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TM9SF3Q9HD45 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 AC011498.5-201ENST00000592027 486 ntBASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.64■□□□□ 0.57
TM9SF3Q9HD45 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms