Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.66■■□□□ 1.06
TRERF1Q96PN7 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 MCCD1P1-208ENST00000445732 328 ntBASIC21.65■■□□□ 1.06
TRERF1Q96PN7 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 AC083849.1-201ENST00000615227 514 ntBASIC21.65■■□□□ 1.06
TRERF1Q96PN7 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.65■■□□□ 1.06
TRERF1Q96PN7 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.64■■□□□ 1.06
TRERF1Q96PN7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TRERF1Q96PN7 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.64■■□□□ 1.06
TRERF1Q96PN7 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.64■■□□□ 1.06
TRERF1Q96PN7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TRERF1Q96PN7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRERF1Q96PN7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.64■■□□□ 1.06
TRERF1Q96PN7 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.64■■□□□ 1.06
TRERF1Q96PN7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRERF1Q96PN7 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 AC018445.3-201ENST00000624177 1945 ntBASIC21.64■■□□□ 1.05
TRERF1Q96PN7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
TRERF1Q96PN7 LINC01311-201ENST00000565162 1445 ntBASIC21.63■■□□□ 1.05
TRERF1Q96PN7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 ZNF444P1-201ENST00000559497 298 ntBASIC21.63■■□□□ 1.05
TRERF1Q96PN7 AL136038.3-201ENST00000561909 1096 ntBASIC21.63■■□□□ 1.05
TRERF1Q96PN7 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 MIR3180-5-201ENST00000583743 153 ntBASIC21.63■■□□□ 1.05
TRERF1Q96PN7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 AC024243.1-201ENST00000609234 778 ntBASIC21.63■■□□□ 1.05
TRERF1Q96PN7 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 AC116407.4-201ENST00000623319 1061 ntBASIC21.63■■□□□ 1.05
TRERF1Q96PN7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRERF1Q96PN7 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 VENTXP5-201ENST00000523979 775 ntBASIC21.62■■□□□ 1.05
TRERF1Q96PN7 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 METTL23-204ENST00000586752 904 ntTSL 2 BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRERF1Q96PN7 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms