Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 KRT8P50-201ENST00000562022 1438 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 AP000974.1-201ENST00000623909 2387 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 AC092647.4-201ENST00000457211 535 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 KRT18P35-201ENST00000510488 1269 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 MIR3917-201ENST00000580971 93 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 MIR3180-4-201ENST00000582223 153 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 NTF6B-201ENST00000591913 560 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 AL445228.2-201ENST00000605589 952 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 AC018445.3-201ENST00000624177 1945 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 AL031598.1-201ENST00000561511 1773 ntBASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
ECHDC3Q96DC8 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 AP000593.1-201ENST00000393668 712 ntBASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 RASA4DP-201ENST00000460726 1199 ntBASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 AC010240.3-201ENST00000607688 395 ntBASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ECHDC3Q96DC8 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 AL359075.1-203ENST00000462729 1002 ntBASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 AC034232.1-201ENST00000506026 1064 ntBASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ECHDC3Q96DC8 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 HYMAI.1-201ENST00000620949 238 ntBASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.65■□□□□ 0.58
ECHDC3Q96DC8 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms