Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 AC093827.2-201ENST00000512654 315 ntBASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 AC060766.5-201ENST00000590539 871 ntBASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 ESPNP-201ENST00000270691 2015 ntBASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 AL162741.1-201ENST00000565563 1558 ntBASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 KRT17P1-201ENST00000399211 1546 ntBASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF540Q8NDQ6 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 PRORSD1P-202ENST00000563365 2154 ntBASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 AL355472.2-201ENST00000422958 438 ntBASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 AP003097.1-201ENST00000530657 1135 ntBASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 AC083906.6-201ENST00000641366 219 ntBASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 AC126763.1-201ENST00000552015 2118 ntBASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ZNF540Q8NDQ6 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 TFP1-202ENST00000475455 1573 ntBASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 AC128676.1-201ENST00000454392 318 ntBASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
ZNF540Q8NDQ6 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ZNF540Q8NDQ6 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms