Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
USP48Q86UV5 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
USP48Q86UV5 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
USP48Q86UV5 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC22.87■■□□□ 1.25
USP48Q86UV5 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
USP48Q86UV5 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
USP48Q86UV5 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC22.87■■□□□ 1.25
USP48Q86UV5 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
USP48Q86UV5 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC22.86■■□□□ 1.25
USP48Q86UV5 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
USP48Q86UV5 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC22.86■■□□□ 1.25
USP48Q86UV5 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
USP48Q86UV5 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC22.86■■□□□ 1.25
USP48Q86UV5 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC22.86■■□□□ 1.25
USP48Q86UV5 TBCB-205ENST00000585746 875 ntTSL 3 BASIC22.86■■□□□ 1.25
USP48Q86UV5 AC011498.5-201ENST00000592027 486 ntBASIC22.86■■□□□ 1.25
USP48Q86UV5 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.86■■□□□ 1.25
USP48Q86UV5 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
USP48Q86UV5 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC22.86■■□□□ 1.25
USP48Q86UV5 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
USP48Q86UV5 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC22.86■■□□□ 1.25
USP48Q86UV5 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC22.86■■□□□ 1.25
USP48Q86UV5 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC22.85■■□□□ 1.25
USP48Q86UV5 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC22.85■■□□□ 1.25
USP48Q86UV5 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC22.85■■□□□ 1.25
USP48Q86UV5 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
USP48Q86UV5 AP002383.4-201ENST00000442518 975 ntBASIC22.85■■□□□ 1.25
USP48Q86UV5 BX276092.5-203ENST00000456199 560 ntBASIC22.85■■□□□ 1.25
USP48Q86UV5 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC22.85■■□□□ 1.25
USP48Q86UV5 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC22.85■■□□□ 1.25
USP48Q86UV5 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
USP48Q86UV5 AC004263.2-201ENST00000617183 678 ntBASIC22.85■■□□□ 1.25
USP48Q86UV5 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC22.85■■□□□ 1.25
USP48Q86UV5 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC22.85■■□□□ 1.25
USP48Q86UV5 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
USP48Q86UV5 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
USP48Q86UV5 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
USP48Q86UV5 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
USP48Q86UV5 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC22.84■■□□□ 1.25
USP48Q86UV5 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 KRT8P11-201ENST00000409686 1436 ntBASIC22.84■■□□□ 1.25
USP48Q86UV5 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC22.84■■□□□ 1.25
USP48Q86UV5 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC22.84■■□□□ 1.25
USP48Q86UV5 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC22.84■■□□□ 1.25
USP48Q86UV5 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
USP48Q86UV5 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC22.84■■□□□ 1.25
USP48Q86UV5 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC22.84■■□□□ 1.25
USP48Q86UV5 RASA4DP-201ENST00000460726 1199 ntBASIC22.84■■□□□ 1.25
USP48Q86UV5 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC22.84■■□□□ 1.25
USP48Q86UV5 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC22.84■■□□□ 1.25
USP48Q86UV5 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC22.84■■□□□ 1.25
USP48Q86UV5 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC22.84■■□□□ 1.25
USP48Q86UV5 MIR4674-201ENST00000582457 87 ntBASIC22.84■■□□□ 1.25
USP48Q86UV5 AL121672.3-201ENST00000608644 468 ntBASIC22.84■■□□□ 1.25
USP48Q86UV5 GXYLT1P4-201ENST00000613576 1192 ntBASIC22.84■■□□□ 1.25
USP48Q86UV5 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC22.84■■□□□ 1.25
USP48Q86UV5 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
USP48Q86UV5 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
USP48Q86UV5 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC22.84■■□□□ 1.25
USP48Q86UV5 AP001271.2-201ENST00000624018 1556 ntBASIC22.84■■□□□ 1.25
USP48Q86UV5 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
USP48Q86UV5 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
USP48Q86UV5 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP48Q86UV5 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP48Q86UV5 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
USP48Q86UV5 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP48Q86UV5 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP48Q86UV5 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
USP48Q86UV5 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP48Q86UV5 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP48Q86UV5 BUB3-202ENST00000368859 667 ntTSL 3 BASIC22.83■■□□□ 1.25
USP48Q86UV5 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms