Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC063952.2-201ENST00000498792 1227 ntBASIC17.29■□□□□ 0.36
RNF4P78317 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.29■□□□□ 0.36
RNF4P78317 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF4P78317 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
RNF4P78317 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF4P78317 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF4P78317 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF4P78317 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF4P78317 AC034236.2-201ENST00000606662 1610 ntBASIC17.29■□□□□ 0.36
RNF4P78317 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RNF4P78317 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RNF4P78317 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF4P78317 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RNF4P78317 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF4P78317 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.28■□□□□ 0.36
RNF4P78317 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.28■□□□□ 0.36
RNF4P78317 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.28■□□□□ 0.36
RNF4P78317 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.28■□□□□ 0.36
RNF4P78317 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.28■□□□□ 0.36
RNF4P78317 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.28■□□□□ 0.36
RNF4P78317 GCSHP2-201ENST00000560971 527 ntBASIC17.28■□□□□ 0.36
RNF4P78317 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.28■□□□□ 0.36
RNF4P78317 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RNF4P78317 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.28■□□□□ 0.36
RNF4P78317 AC112497.1-201ENST00000624824 639 ntBASIC17.28■□□□□ 0.36
RNF4P78317 AL590326.2-201ENST00000625139 305 ntBASIC17.28■□□□□ 0.36
RNF4P78317 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF4P78317 KRT8P7-201ENST00000533003 1432 ntBASIC17.28■□□□□ 0.36
RNF4P78317 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.28■□□□□ 0.36
RNF4P78317 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF4P78317 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF4P78317 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
RNF4P78317 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.28■□□□□ 0.36
RNF4P78317 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RNF4P78317 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
RNF4P78317 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.27■□□□□ 0.36
RNF4P78317 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
RNF4P78317 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
RNF4P78317 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
RNF4P78317 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
RNF4P78317 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
RNF4P78317 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.27■□□□□ 0.36
RNF4P78317 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
RNF4P78317 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
RNF4P78317 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 KRT18P23-201ENST00000435622 1283 ntBASIC17.27■□□□□ 0.36
RNF4P78317 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 AC022616.7-201ENST00000525383 220 ntBASIC17.27■□□□□ 0.36
RNF4P78317 LINC01238-205ENST00000567549 1107 ntBASIC17.27■□□□□ 0.36
RNF4P78317 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.27■□□□□ 0.36
RNF4P78317 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 AC024243.1-201ENST00000609234 778 ntBASIC17.27■□□□□ 0.36
RNF4P78317 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RNF4P78317 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
RNF4P78317 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RNF4P78317 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
RNF4P78317 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RNF4P78317 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.27■□□□□ 0.35
RNF4P78317 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
RNF4P78317 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RNF4P78317 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RNF4P78317 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.27■□□□□ 0.35
RNF4P78317 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
RNF4P78317 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RNF4P78317 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 Z98044.1-201ENST00000632503 1764 ntBASIC17.26■□□□□ 0.35
RNF4P78317 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RNF4P78317 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.26■□□□□ 0.35
RNF4P78317 AC092647.4-201ENST00000457211 535 ntBASIC17.26■□□□□ 0.35
RNF4P78317 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.26■□□□□ 0.35
RNF4P78317 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RNF4P78317 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.26■□□□□ 0.35
RNF4P78317 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms