Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLCN3P51790 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CLCN3P51790 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CLCN3P51790 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLCN3P51790 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.52■□□□□ 0.88
CLCN3P51790 HCG4P8-203ENST00000443049 980 ntBASIC20.52■□□□□ 0.88
CLCN3P51790 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.52■□□□□ 0.88
CLCN3P51790 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.52■□□□□ 0.88
CLCN3P51790 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.52■□□□□ 0.88
CLCN3P51790 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.52■□□□□ 0.88
CLCN3P51790 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLCN3P51790 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 AL162741.1-201ENST00000565563 1558 ntBASIC20.51■□□□□ 0.87
CLCN3P51790 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CLCN3P51790 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.51■□□□□ 0.87
CLCN3P51790 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.51■□□□□ 0.87
CLCN3P51790 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.51■□□□□ 0.87
CLCN3P51790 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.51■□□□□ 0.87
CLCN3P51790 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CLCN3P51790 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLCN3P51790 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLCN3P51790 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLCN3P51790 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CLCN3P51790 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLCN3P51790 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.5■□□□□ 0.87
CLCN3P51790 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.5■□□□□ 0.87
CLCN3P51790 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.5■□□□□ 0.87
CLCN3P51790 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.5■□□□□ 0.87
CLCN3P51790 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.5■□□□□ 0.87
CLCN3P51790 AC011498.5-201ENST00000592027 486 ntBASIC20.5■□□□□ 0.87
CLCN3P51790 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.5■□□□□ 0.87
CLCN3P51790 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.5■□□□□ 0.87
CLCN3P51790 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CLCN3P51790 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CLCN3P51790 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CLCN3P51790 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLCN3P51790 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.5■□□□□ 0.87
CLCN3P51790 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLCN3P51790 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLCN3P51790 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLCN3P51790 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLCN3P51790 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.5■□□□□ 0.87
CLCN3P51790 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CLCN3P51790 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.49■□□□□ 0.87
CLCN3P51790 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.49■□□□□ 0.87
CLCN3P51790 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
CLCN3P51790 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.49■□□□□ 0.87
CLCN3P51790 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CLCN3P51790 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CLCN3P51790 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.49■□□□□ 0.87
CLCN3P51790 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCN3P51790 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.49■□□□□ 0.87
CLCN3P51790 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.48■□□□□ 0.87
CLCN3P51790 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 SLC25A24-204ENST00000569674 2357 ntBASIC20.48■□□□□ 0.87
CLCN3P51790 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 MIR662-201ENST00000384847 95 ntBASIC20.48■□□□□ 0.87
CLCN3P51790 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.48■□□□□ 0.87
CLCN3P51790 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.48■□□□□ 0.87
CLCN3P51790 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.48■□□□□ 0.87
CLCN3P51790 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLCN3P51790 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CLCN3P51790 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CLCN3P51790 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CLCN3P51790 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCN3P51790 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCN3P51790 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.47■□□□□ 0.87
CLCN3P51790 KRT8P50-201ENST00000562022 1438 ntBASIC20.47■□□□□ 0.87
CLCN3P51790 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms