Protein–RNA interactions for Protein: P43243

MATR3, Matrin-3, humanhuman

Known RBP eCLIP

Length 847 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3P43243 LRRC8D-202ENST00000394593 3345 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.715e-7■■■□□ 18.1
MATR3P43243 LRRC8D-203ENST00000414841 666 ntTSL 38.9□□□□□ -0.985e-7■■■□□ 18.1
MATR3P43243 LRRC8D-204ENST00000441269 905 ntTSL 34.29□□□□□ -1.725e-7■■■□□ 18.1
MATR3P43243 PVT1-208ENST00000519481 542 ntTSL 211.9□□□□□ -0.57e-9■■■□□ 18.1
MATR3P43243 PVT1-206ENST00000517838 518 ntTSL 27.87□□□□□ -1.157e-9■■■□□ 18.1
MATR3P43243 KMT2C-207ENST00000452749 479 ntTSL 513.52□□□□□ -0.252e-6■■■□□ 18.1
MATR3P43243 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.127e-7■■■□□ 18.1
MATR3P43243 ELOVL6-205ENST00000506625 610 ntTSL 410.77□□□□□ -0.697e-7■■■□□ 18.1
MATR3P43243 ELOVL6-204ENST00000506461 575 ntTSL 49.25□□□□□ -0.937e-7■■■□□ 18.1
MATR3P43243 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.37e-7■■■□□ 18.1
MATR3P43243 ELOVL6-203ENST00000503885 458 ntTSL 45.41□□□□□ -1.547e-7■■■□□ 18.1
MATR3P43243 ELOVL6-208ENST00000514184 607 ntTSL 33.54□□□□□ -1.847e-7■■■□□ 18.1
MATR3P43243 AC104041.1-202ENST00000560097 566 ntTSL 4 BASIC12.66□□□□□ -0.386e-7■■■□□ 18.1
MATR3P43243 AC104041.1-201ENST00000560054 569 ntTSL 5 BASIC10.62□□□□□ -0.716e-7■■■□□ 18.1
MATR3P43243 HNMT-206ENST00000475675 743 ntTSL 38.95□□□□□ -0.981e-7■■■□□ 18.1
MATR3P43243 EXOC4-204ENST00000460346 762 ntTSL 410.57□□□□□ -0.726e-7■■■□□ 18.1
MATR3P43243 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.856e-7■■■□□ 18.1
MATR3P43243 EXOC4-209ENST00000469115 755 ntTSL 37.67□□□□□ -1.186e-7■■■□□ 18.1
MATR3P43243 EXOC4-216ENST00000482089 628 ntTSL 47.67□□□□□ -1.186e-7■■■□□ 18.1
MATR3P43243 EXOC4-217ENST00000483800 559 ntTSL 47.67□□□□□ -1.186e-7■■■□□ 18.1
MATR3P43243 EXOC4-221ENST00000489931 578 ntTSL 47.67□□□□□ -1.186e-7■■■□□ 18.1
MATR3P43243 EXOC4-212ENST00000479839 543 ntTSL 45.79□□□□□ -1.486e-7■■■□□ 18.1
MATR3P43243 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.883e-7■■■□□ 18.1
MATR3P43243 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.273e-7■■■□□ 18.1
MATR3P43243 LONP2-208ENST00000566755 2514 ntTSL 514.1□□□□□ -0.151e-6■■■□□ 18.1
MATR3P43243 LONP2-203ENST00000535754 2580 ntTSL 1 (best) BASIC13.78□□□□□ -0.21e-6■■■□□ 18.1
MATR3P43243 LONP2-202ENST00000416006 2056 ntTSL 213.75□□□□□ -0.211e-6■■■□□ 18.1
MATR3P43243 LONP2-201ENST00000285737 8199 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.371e-6■■■□□ 18.1
MATR3P43243 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.124e-7■■■□□ 18.1
MATR3P43243 SMARCC1-202ENST00000425518 3827 ntTSL 28.43□□□□□ -1.064e-7■■■□□ 18.1
MATR3P43243 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.969e-7■■■□□ 18.1
MATR3P43243 NPSR1-AS1-204ENST00000431669 369 ntTSL 1 (best)4.34□□□□□ -1.711e-6■■■□□ 18
MATR3P43243 CDS2-204ENST00000467923 783 ntTSL 325.92■■□□□ 1.745e-7■■■□□ 18
MATR3P43243 CDS2-202ENST00000450570 945 ntTSL 324.5■■□□□ 1.515e-7■■■□□ 18
MATR3P43243 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.395e-7■■■□□ 18
MATR3P43243 CDS2-205ENST00000468817 2706 ntTSL 214.85□□□□□ -0.035e-7■■■□□ 18
MATR3P43243 CDS2-206ENST00000486875 709 ntTSL 213.45□□□□□ -0.265e-7■■■□□ 18
MATR3P43243 ZFAS1-207ENST00000458653 596 ntTSL 231.02■■■□□ 2.561e-8■■■□□ 18
MATR3P43243 ZFAS1-202ENST00000371743 1008 ntTSL 1 (best)27.49■■□□□ 1.991e-8■■■□□ 18
MATR3P43243 ZFAS1-203ENST00000417721 860 ntTSL 1 (best)26.24■■□□□ 1.791e-8■■■□□ 18
MATR3P43243 ZFAS1-205ENST00000441722 946 ntTSL 1 (best)23.78■■□□□ 1.41e-8■■■□□ 18
MATR3P43243 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.78■■□□□ 1.41e-8■■■□□ 18
MATR3P43243 ZFAS1-209ENST00000620594 508 ntTSL 38.38□□□□□ -1.071e-8■■■□□ 18
MATR3P43243 ZFAS1-201ENST00000326677 504 ntTSL 1 (best)7.85□□□□□ -1.151e-8■■■□□ 18
MATR3P43243 ZFAS1-204ENST00000428008 566 ntTSL 27.85□□□□□ -1.151e-8■■■□□ 18
MATR3P43243 KDM7A-201ENST00000397560 9272 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.062e-6■■■□□ 18
MATR3P43243 SHANK3-202ENST00000414786 7394 ntTSL 522.43■■□□□ 1.183e-7■■■□□ 18
MATR3P43243 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.013e-7■■■□□ 18
MATR3P43243 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC19.28■□□□□ 0.683e-7■■■□□ 18
MATR3P43243 CASC19-240ENST00000641578 1061 nt8.42□□□□□ -1.068e-10■■■□□ 18
MATR3P43243 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC23.62■■□□□ 1.373e-8■■■□□ 18
MATR3P43243 GSN-207ENST00000432226 1042 ntTSL 518.86■□□□□ 0.613e-8■■■□□ 18
MATR3P43243 GSN-212ENST00000477863 716 ntTSL 417.41■□□□□ 0.383e-8■■■□□ 18
MATR3P43243 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.22■□□□□ 0.353e-8■■■□□ 18
MATR3P43243 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.19■□□□□ 0.343e-8■■■□□ 18
MATR3P43243 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.98■□□□□ 0.313e-8■■■□□ 18
MATR3P43243 GSN-210ENST00000477104 806 ntTSL 416.59■□□□□ 0.253e-8■■■□□ 18
MATR3P43243 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.91■□□□□ 0.143e-8■■■□□ 18
MATR3P43243 GSN-205ENST00000373823 3341 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.153e-8■■■□□ 18
MATR3P43243 GSN-213ENST00000483960 802 ntTSL 312.43□□□□□ -0.423e-8■■■□□ 18
MATR3P43243 FOXN3-206ENST00000554005 450 ntTSL 54.94□□□□□ -1.628e-7■■■□□ 18
MATR3P43243 ATXN1-204ENST00000473388 1569 ntTSL 1 (best)8.06□□□□□ -1.125e-7■■■□□ 18
MATR3P43243 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC16.91■□□□□ 0.33e-6■■■□□ 18
MATR3P43243 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC16.31■□□□□ 0.23e-6■■■□□ 18
MATR3P43243 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.183e-6■■■□□ 18
MATR3P43243 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.6■■□□□ 1.698e-7■■■□□ 18
MATR3P43243 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC24.85■■□□□ 1.578e-7■■■□□ 18
MATR3P43243 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.578e-7■■■□□ 18
MATR3P43243 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.148e-7■■■□□ 18
MATR3P43243 ZNRF1-203ENST00000564320 607 ntTSL 39.35□□□□□ -0.918e-7■■■□□ 18
MATR3P43243 ZNRF1-209ENST00000568511 485 ntTSL 49.09□□□□□ -0.958e-7■■■□□ 18
MATR3P43243 CAPZA1-205ENST00000485542 739 ntTSL 210.72□□□□□ -0.692e-7■■■□□ 18
MATR3P43243 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.22□□□□□ -2.216e-6■■■□□ 18
MATR3P43243 LINC-PINT-202ENST00000423414 616 ntTSL 424.9■■□□□ 1.588e-7■■■□□ 17.9
MATR3P43243 LINC-PINT-204ENST00000431189 803 ntTSL 323.36■■□□□ 1.338e-7■■■□□ 17.9
MATR3P43243 LINC-PINT-205ENST00000433079 1262 ntTSL 1 (best)20.28■□□□□ 0.848e-7■■■□□ 17.9
MATR3P43243 LINC-PINT-208ENST00000451786 3505 ntTSL 2 BASIC13.56□□□□□ -0.248e-7■■■□□ 17.9
MATR3P43243 TNRC6B-204ENST00000441751 415 ntTSL 517.74■□□□□ 0.431e-6■■■□□ 17.9
MATR3P43243 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.041e-6■■■□□ 17.9
MATR3P43243 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.91□□□□□ -1.461e-6■■■□□ 17.9
MATR3P43243 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.853e-6■■■□□ 17.9
MATR3P43243 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.493e-6■■■□□ 17.9
MATR3P43243 NCOA6-201ENST00000359003 7081 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.363e-6■■■□□ 17.9
MATR3P43243 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.153e-6■■■□□ 17.9
MATR3P43243 SOX5-209ENST00000536911 855 ntTSL 310.14□□□□□ -0.799e-7■■■□□ 17.9
MATR3P43243 SOX5-206ENST00000535530 576 ntTSL 49.54□□□□□ -0.889e-7■■■□□ 17.9
MATR3P43243 SOX5-207ENST00000536629 570 ntTSL 48.74□□□□□ -1.019e-7■■■□□ 17.9
MATR3P43243 HNMT-205ENST00000467390 532 ntTSL 25.42□□□□□ -1.542e-7■■■□□ 17.9
MATR3P43243 SMYD3-202ENST00000366517 1372 ntTSL 1 (best)8□□□□□ -1.133e-6■■■□□ 17.9
MATR3P43243 SMYD3-217ENST00000493441 823 ntTSL 27.39□□□□□ -1.233e-6■■■□□ 17.9
MATR3P43243 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC13.22□□□□□ -0.292e-6■■■□□ 17.9
MATR3P43243 FAM69A-201ENST00000370310 2574 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.352e-6■■■□□ 17.9
MATR3P43243 FAM69A-205ENST00000616709 2426 ntTSL 3 BASIC12.03□□□□□ -0.482e-6■■■□□ 17.9
MATR3P43243 FAM69A-203ENST00000613902 2468 ntTSL 4 BASIC10.38□□□□□ -0.752e-6■■■□□ 17.9
MATR3P43243 FAM229A-202ENST00000416512 2759 ntTSL 1 (best)20.66■□□□□ 0.91e-6■■■□□ 17.9
MATR3P43243 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.621e-8■■■□□ 17.9
MATR3P43243 FAM229A-201ENST00000415596 446 ntTSL 316.74■□□□□ 0.271e-6■■■□□ 17.9
MATR3P43243 NRIP1-207ENST00000638122 543 ntTSL 1 (best)13.15□□□□□ -0.31e-8■■■□□ 17.9
MATR3P43243 NRIP1-202ENST00000400199 7562 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.451e-8■■■□□ 17.9
MATR3P43243 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.721e-8■■■□□ 17.9
Retrieved 100 of 16,209 protein–RNA pairs in 102.7 ms