Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HNF4AP41235 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.14■□□□□ 0.49
HNF4AP41235 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HNF4AP41235 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 WIZP1-201ENST00000531444 2299 ntBASIC18.14■□□□□ 0.49
HNF4AP41235 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 AC079598.2-202ENST00000546624 1451 ntBASIC18.14■□□□□ 0.49
HNF4AP41235 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.13■□□□□ 0.49
HNF4AP41235 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HNF4AP41235 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HNF4AP41235 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.13■□□□□ 0.49
HNF4AP41235 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
HNF4AP41235 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 MFAP1P1-201ENST00000442257 1255 ntBASIC18.13■□□□□ 0.49
HNF4AP41235 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.13■□□□□ 0.49
HNF4AP41235 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.13■□□□□ 0.49
HNF4AP41235 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.13■□□□□ 0.49
HNF4AP41235 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.13■□□□□ 0.49
HNF4AP41235 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.13■□□□□ 0.49
HNF4AP41235 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
HNF4AP41235 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.13■□□□□ 0.49
HNF4AP41235 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.13■□□□□ 0.49
HNF4AP41235 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HNF4AP41235 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HNF4AP41235 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.13■□□□□ 0.49
HNF4AP41235 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
HNF4AP41235 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
HNF4AP41235 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.12■□□□□ 0.49
HNF4AP41235 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HNF4AP41235 MIR1238-201ENST00000408483 83 ntBASIC18.12■□□□□ 0.49
HNF4AP41235 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.12■□□□□ 0.49
HNF4AP41235 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HNF4AP41235 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.12■□□□□ 0.49
HNF4AP41235 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HNF4AP41235 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.12■□□□□ 0.49
HNF4AP41235 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 MTMR9LP-203ENST00000426597 1545 ntBASIC18.12■□□□□ 0.49
HNF4AP41235 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
HNF4AP41235 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.12■□□□□ 0.49
HNF4AP41235 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.12■□□□□ 0.49
HNF4AP41235 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.12■□□□□ 0.49
HNF4AP41235 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.12■□□□□ 0.49
HNF4AP41235 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HNF4AP41235 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.11■□□□□ 0.49
HNF4AP41235 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HNF4AP41235 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.11■□□□□ 0.49
HNF4AP41235 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HNF4AP41235 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.11■□□□□ 0.49
HNF4AP41235 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.11■□□□□ 0.49
HNF4AP41235 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.11■□□□□ 0.49
HNF4AP41235 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
HNF4AP41235 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.11■□□□□ 0.49
HNF4AP41235 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.11■□□□□ 0.49
HNF4AP41235 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.11■□□□□ 0.49
HNF4AP41235 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HNF4AP41235 BCL2-203ENST00000589955 5011 ntBASIC18.11■□□□□ 0.49
HNF4AP41235 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HNF4AP41235 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms