Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
XRCC1P18887 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.64■□□□□ 0.57
XRCC1P18887 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.64■□□□□ 0.57
XRCC1P18887 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC1P18887 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC1P18887 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC1P18887 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC1P18887 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC1P18887 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.63■□□□□ 0.57
XRCC1P18887 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
XRCC1P18887 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.63■□□□□ 0.57
XRCC1P18887 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.63■□□□□ 0.57
XRCC1P18887 AC010653.2-201ENST00000623505 997 ntBASIC18.63■□□□□ 0.57
XRCC1P18887 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
XRCC1P18887 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
XRCC1P18887 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
XRCC1P18887 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
XRCC1P18887 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC1P18887 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC1P18887 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
XRCC1P18887 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC1P18887 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.63■□□□□ 0.57
XRCC1P18887 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC1P18887 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
XRCC1P18887 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC1P18887 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.63■□□□□ 0.57
XRCC1P18887 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
XRCC1P18887 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
XRCC1P18887 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.62■□□□□ 0.57
XRCC1P18887 INGX-201ENST00000359239 846 ntBASIC18.62■□□□□ 0.57
XRCC1P18887 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.62■□□□□ 0.57
XRCC1P18887 AL137013.1-201ENST00000432946 1228 ntBASIC18.62■□□□□ 0.57
XRCC1P18887 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.62■□□□□ 0.57
XRCC1P18887 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.62■□□□□ 0.57
XRCC1P18887 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.62■□□□□ 0.57
XRCC1P18887 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
XRCC1P18887 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
XRCC1P18887 AC073508.3-201ENST00000619697 1419 ntBASIC18.62■□□□□ 0.57
XRCC1P18887 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.62■□□□□ 0.57
XRCC1P18887 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.62■□□□□ 0.57
XRCC1P18887 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
XRCC1P18887 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
XRCC1P18887 WIZP1-201ENST00000531444 2299 ntBASIC18.62■□□□□ 0.57
XRCC1P18887 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
XRCC1P18887 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
XRCC1P18887 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 AC090164.3-201ENST00000610780 2143 ntBASIC18.61■□□□□ 0.57
XRCC1P18887 SDHAP1-207ENST00000440850 2000 ntBASIC18.61■□□□□ 0.57
XRCC1P18887 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.61■□□□□ 0.57
XRCC1P18887 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.61■□□□□ 0.57
XRCC1P18887 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.61■□□□□ 0.57
XRCC1P18887 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 AC092338.2-201ENST00000568827 1415 ntBASIC18.61■□□□□ 0.57
XRCC1P18887 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 TERF1P1-201ENST00000311003 1181 ntBASIC18.61■□□□□ 0.57
XRCC1P18887 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 TMPOP1-202ENST00000424642 1267 ntBASIC18.61■□□□□ 0.57
XRCC1P18887 TSPY21P-201ENST00000433481 731 ntBASIC18.61■□□□□ 0.57
XRCC1P18887 AC007663.1-201ENST00000438948 1240 ntBASIC18.61■□□□□ 0.57
XRCC1P18887 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.61■□□□□ 0.57
XRCC1P18887 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
XRCC1P18887 AL353719.1-201ENST00000566847 864 ntBASIC18.61■□□□□ 0.57
XRCC1P18887 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 FAM87A-204ENST00000613235 858 ntBASIC18.61■□□□□ 0.57
XRCC1P18887 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.61■□□□□ 0.57
XRCC1P18887 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.61■□□□□ 0.57
XRCC1P18887 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.61■□□□□ 0.57
XRCC1P18887 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
XRCC1P18887 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.6■□□□□ 0.57
XRCC1P18887 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.6■□□□□ 0.57
XRCC1P18887 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.6■□□□□ 0.57
XRCC1P18887 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms