Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.06■□□□□ 0.48
LDLRP01130 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
LDLRP01130 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.06■□□□□ 0.48
LDLRP01130 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.06■□□□□ 0.48
LDLRP01130 AL390719.1-204ENST00000412397 1219 ntBASIC18.06■□□□□ 0.48
LDLRP01130 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.06■□□□□ 0.48
LDLRP01130 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.06■□□□□ 0.48
LDLRP01130 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.06■□□□□ 0.48
LDLRP01130 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.06■□□□□ 0.48
LDLRP01130 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.06■□□□□ 0.48
LDLRP01130 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LDLRP01130 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LDLRP01130 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.05■□□□□ 0.48
LDLRP01130 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.05■□□□□ 0.48
LDLRP01130 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.05■□□□□ 0.48
LDLRP01130 AP000997.3-201ENST00000623333 2250 ntBASIC18.05■□□□□ 0.48
LDLRP01130 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LDLRP01130 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
LDLRP01130 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LDLRP01130 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.05■□□□□ 0.48
LDLRP01130 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.05■□□□□ 0.48
LDLRP01130 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.05■□□□□ 0.48
LDLRP01130 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.05■□□□□ 0.48
LDLRP01130 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.05■□□□□ 0.48
LDLRP01130 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.05■□□□□ 0.48
LDLRP01130 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDLRP01130 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LDLRP01130 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.05■□□□□ 0.48
LDLRP01130 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LDLRP01130 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LDLRP01130 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.05■□□□□ 0.48
LDLRP01130 AC068880.1-201ENST00000507289 2297 ntBASIC18.05■□□□□ 0.48
LDLRP01130 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.05■□□□□ 0.48
LDLRP01130 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LDLRP01130 ZNF815P-204ENST00000434898 1737 ntBASIC18.04■□□□□ 0.48
LDLRP01130 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LDLRP01130 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 AC113347.1-201ENST00000413321 391 ntBASIC18.04■□□□□ 0.48
LDLRP01130 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.04■□□□□ 0.48
LDLRP01130 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.04■□□□□ 0.48
LDLRP01130 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
LDLRP01130 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
LDLRP01130 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
LDLRP01130 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
LDLRP01130 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.04■□□□□ 0.48
LDLRP01130 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.04■□□□□ 0.48
LDLRP01130 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDLRP01130 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.03■□□□□ 0.48
LDLRP01130 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 HTR7P1-201ENST00000538670 1336 ntBASIC18.03■□□□□ 0.48
LDLRP01130 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.03■□□□□ 0.48
LDLRP01130 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.03■□□□□ 0.48
LDLRP01130 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
LDLRP01130 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
LDLRP01130 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
LDLRP01130 AL353807.1-201ENST00000427475 662 ntBASIC18.03■□□□□ 0.48
LDLRP01130 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.03■□□□□ 0.48
LDLRP01130 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.03■□□□□ 0.48
LDLRP01130 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.03■□□□□ 0.48
LDLRP01130 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LDLRP01130 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.03■□□□□ 0.48
LDLRP01130 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.03■□□□□ 0.48
LDLRP01130 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LDLRP01130 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms