Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDNEP1O95476 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC21.66■■□□□ 1.06
CTDNEP1O95476 MYLKP1-201ENST00000509077 1580 ntBASIC21.66■■□□□ 1.06
CTDNEP1O95476 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.66■■□□□ 1.06
CTDNEP1O95476 SLC25A1P2-201ENST00000430693 912 ntBASIC21.66■■□□□ 1.06
CTDNEP1O95476 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.66■■□□□ 1.06
CTDNEP1O95476 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.66■■□□□ 1.06
CTDNEP1O95476 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.66■■□□□ 1.06
CTDNEP1O95476 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CTDNEP1O95476 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CTDNEP1O95476 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CTDNEP1O95476 AC036111.1-201ENST00000533973 1582 ntBASIC21.65■■□□□ 1.06
CTDNEP1O95476 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CTDNEP1O95476 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTDNEP1O95476 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CTDNEP1O95476 KRT8P50-201ENST00000562022 1438 ntBASIC21.65■■□□□ 1.06
CTDNEP1O95476 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTDNEP1O95476 KRT17P2-201ENST00000300992 1314 ntBASIC21.65■■□□□ 1.06
CTDNEP1O95476 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.65■■□□□ 1.06
CTDNEP1O95476 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.65■■□□□ 1.06
CTDNEP1O95476 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTDNEP1O95476 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.65■■□□□ 1.06
CTDNEP1O95476 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.65■■□□□ 1.06
CTDNEP1O95476 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.65■■□□□ 1.06
CTDNEP1O95476 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTDNEP1O95476 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTDNEP1O95476 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTDNEP1O95476 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTDNEP1O95476 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTDNEP1O95476 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTDNEP1O95476 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CTDNEP1O95476 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
CTDNEP1O95476 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
CTDNEP1O95476 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
CTDNEP1O95476 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CTDNEP1O95476 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CTDNEP1O95476 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
CTDNEP1O95476 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.64■■□□□ 1.05
CTDNEP1O95476 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTDNEP1O95476 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTDNEP1O95476 AC007663.1-201ENST00000438948 1240 ntBASIC21.64■■□□□ 1.05
CTDNEP1O95476 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTDNEP1O95476 MIR3180-5-201ENST00000583743 153 ntBASIC21.64■■□□□ 1.05
CTDNEP1O95476 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.64■■□□□ 1.05
CTDNEP1O95476 AC066615.1-201ENST00000640911 628 ntBASIC21.64■■□□□ 1.05
CTDNEP1O95476 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CTDNEP1O95476 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.64■■□□□ 1.05
CTDNEP1O95476 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTDNEP1O95476 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.64■■□□□ 1.05
CTDNEP1O95476 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CTDNEP1O95476 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CTDNEP1O95476 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CTDNEP1O95476 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTDNEP1O95476 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.64■■□□□ 1.05
CTDNEP1O95476 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
CTDNEP1O95476 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CTDNEP1O95476 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.63■■□□□ 1.05
CTDNEP1O95476 AC099343.3-201ENST00000605834 2503 ntBASIC21.63■■□□□ 1.05
CTDNEP1O95476 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.63■■□□□ 1.05
CTDNEP1O95476 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 AC010947.1-201ENST00000623454 693 ntBASIC21.63■■□□□ 1.05
CTDNEP1O95476 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.63■■□□□ 1.05
CTDNEP1O95476 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.63■■□□□ 1.05
CTDNEP1O95476 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
CTDNEP1O95476 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDNEP1O95476 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
CTDNEP1O95476 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CTDNEP1O95476 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.62■■□□□ 1.05
CTDNEP1O95476 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CTDNEP1O95476 AC093827.2-201ENST00000512654 315 ntBASIC21.62■■□□□ 1.05
CTDNEP1O95476 CR769767.2-201ENST00000622735 460 ntBASIC21.62■■□□□ 1.05
CTDNEP1O95476 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.62■■□□□ 1.05
CTDNEP1O95476 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CTDNEP1O95476 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CTDNEP1O95476 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDNEP1O95476 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CTDNEP1O95476 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.62■■□□□ 1.05
CTDNEP1O95476 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDNEP1O95476 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDNEP1O95476 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.62■■□□□ 1.05
CTDNEP1O95476 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms