Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.72■■□□□ 1.07
CDKL5O76039 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDKL5O76039 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDKL5O76039 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDKL5O76039 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDKL5O76039 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CDKL5O76039 MIR564-202ENST00000385049 94 ntBASIC21.72■■□□□ 1.07
CDKL5O76039 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.72■■□□□ 1.07
CDKL5O76039 AC093827.2-201ENST00000512654 315 ntBASIC21.72■■□□□ 1.07
CDKL5O76039 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.72■■□□□ 1.07
CDKL5O76039 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.72■■□□□ 1.07
CDKL5O76039 AC116562.4-202ENST00000641738 218 ntBASIC21.72■■□□□ 1.07
CDKL5O76039 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
CDKL5O76039 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CDKL5O76039 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
CDKL5O76039 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDKL5O76039 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CDKL5O76039 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.71■■□□□ 1.07
CDKL5O76039 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
CDKL5O76039 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
CDKL5O76039 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.71■■□□□ 1.07
CDKL5O76039 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.71■■□□□ 1.07
CDKL5O76039 KRT18P41-201ENST00000518924 1277 ntBASIC21.71■■□□□ 1.07
CDKL5O76039 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.71■■□□□ 1.07
CDKL5O76039 MIR3180-5-201ENST00000583743 153 ntBASIC21.71■■□□□ 1.07
CDKL5O76039 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
CDKL5O76039 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDKL5O76039 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CDKL5O76039 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.7■■□□□ 1.07
CDKL5O76039 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CDKL5O76039 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CDKL5O76039 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.7■■□□□ 1.06
CDKL5O76039 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.7■■□□□ 1.06
CDKL5O76039 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
CDKL5O76039 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.7■■□□□ 1.06
CDKL5O76039 BX088651.1-201ENST00000540551 451 ntBASIC21.7■■□□□ 1.06
CDKL5O76039 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.7■■□□□ 1.06
CDKL5O76039 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.7■■□□□ 1.06
CDKL5O76039 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.7■■□□□ 1.06
CDKL5O76039 AC092338.2-201ENST00000568827 1415 ntBASIC21.7■■□□□ 1.06
CDKL5O76039 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 AC126763.1-201ENST00000552015 2118 ntBASIC21.7■■□□□ 1.06
CDKL5O76039 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
CDKL5O76039 AL499627.1-201ENST00000569373 2188 ntBASIC21.7■■□□□ 1.06
CDKL5O76039 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CDKL5O76039 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.7■■□□□ 1.06
CDKL5O76039 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.69■■□□□ 1.06
CDKL5O76039 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
CDKL5O76039 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.69■■□□□ 1.06
CDKL5O76039 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.69■■□□□ 1.06
CDKL5O76039 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 AC138932.1-201ENST00000534164 6830 ntBASIC21.69■■□□□ 1.06
CDKL5O76039 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.69■■□□□ 1.06
CDKL5O76039 AP003041.3-201ENST00000527151 707 ntBASIC21.69■■□□□ 1.06
CDKL5O76039 MIR4674-201ENST00000582457 87 ntBASIC21.69■■□□□ 1.06
CDKL5O76039 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.69■■□□□ 1.06
CDKL5O76039 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.69■■□□□ 1.06
CDKL5O76039 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CDKL5O76039 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms