Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
TRIM13O60858 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.42■□□□□ 0.54
TRIM13O60858 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM13O60858 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRIM13O60858 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRIM13O60858 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM13O60858 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM13O60858 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM13O60858 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM13O60858 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM13O60858 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
TRIM13O60858 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM13O60858 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM13O60858 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM13O60858 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 AC112777.1-201ENST00000540175 1423 ntBASIC18.41■□□□□ 0.54
TRIM13O60858 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM13O60858 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
TRIM13O60858 AC135776.1-201ENST00000319817 2481 ntBASIC18.41■□□□□ 0.54
TRIM13O60858 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
TRIM13O60858 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM13O60858 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.41■□□□□ 0.54
TRIM13O60858 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM13O60858 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM13O60858 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.41■□□□□ 0.54
TRIM13O60858 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
TRIM13O60858 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM13O60858 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TRIM13O60858 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM13O60858 KRT8P11-201ENST00000409686 1436 ntBASIC18.4■□□□□ 0.54
TRIM13O60858 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM13O60858 KRT8P3-201ENST00000519669 1449 ntBASIC18.4■□□□□ 0.54
TRIM13O60858 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.4■□□□□ 0.54
TRIM13O60858 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TRIM13O60858 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM13O60858 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
TRIM13O60858 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRIM13O60858 AC142086.2-201ENST00000569753 217 ntBASIC18.4■□□□□ 0.54
TRIM13O60858 AC008403.3-201ENST00000598924 454 ntBASIC18.4■□□□□ 0.54
TRIM13O60858 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 LTB4R2-202ENST00000528054 3092 ntBASIC18.4■□□□□ 0.54
TRIM13O60858 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TRIM13O60858 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TRIM13O60858 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM13O60858 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM13O60858 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM13O60858 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM13O60858 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM13O60858 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM13O60858 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM13O60858 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM13O60858 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM13O60858 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM13O60858 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.39■□□□□ 0.53
TRIM13O60858 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.39■□□□□ 0.53
TRIM13O60858 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.39■□□□□ 0.53
TRIM13O60858 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM13O60858 MTDHP1-201ENST00000605323 784 ntBASIC18.39■□□□□ 0.53
TRIM13O60858 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
TRIM13O60858 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
TRIM13O60858 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM13O60858 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms