Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.94■□□□□ 0.3
SSX4O60224 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.94■□□□□ 0.3
SSX4O60224 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SSX4O60224 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.94■□□□□ 0.3
SSX4O60224 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.94■□□□□ 0.3
SSX4O60224 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.94■□□□□ 0.3
SSX4O60224 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.94■□□□□ 0.3
SSX4O60224 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.94■□□□□ 0.3
SSX4O60224 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.94■□□□□ 0.3
SSX4O60224 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.94■□□□□ 0.3
SSX4O60224 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.94■□□□□ 0.3
SSX4O60224 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.94■□□□□ 0.3
SSX4O60224 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SSX4O60224 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.94■□□□□ 0.3
SSX4O60224 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SSX4O60224 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SSX4O60224 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC16.93■□□□□ 0.3
SSX4O60224 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SSX4O60224 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC16.93■□□□□ 0.3
SSX4O60224 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.93■□□□□ 0.3
SSX4O60224 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.93■□□□□ 0.3
SSX4O60224 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SSX4O60224 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.93■□□□□ 0.3
SSX4O60224 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.93■□□□□ 0.3
SSX4O60224 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.93■□□□□ 0.3
SSX4O60224 AL355075.4-201ENST00000554988 638 ntBASIC16.93■□□□□ 0.3
SSX4O60224 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.93■□□□□ 0.3
SSX4O60224 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.93■□□□□ 0.3
SSX4O60224 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SSX4O60224 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 NBPF21P-201ENST00000425093 1451 ntBASIC16.93■□□□□ 0.3
SSX4O60224 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SSX4O60224 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.92■□□□□ 0.3
SSX4O60224 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SSX4O60224 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SSX4O60224 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SSX4O60224 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SSX4O60224 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 AC087499.1-201ENST00000418141 1075 ntBASIC16.92■□□□□ 0.3
SSX4O60224 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.92■□□□□ 0.3
SSX4O60224 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SSX4O60224 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.92■□□□□ 0.3
SSX4O60224 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.92■□□□□ 0.3
SSX4O60224 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.92■□□□□ 0.3
SSX4O60224 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.92■□□□□ 0.3
SSX4O60224 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SSX4O60224 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SSX4O60224 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 Six3os1_6.1-201ENST00000620790 196 ntBASIC16.92■□□□□ 0.3
SSX4O60224 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SSX4O60224 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.92■□□□□ 0.3
SSX4O60224 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.92■□□□□ 0.3
SSX4O60224 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SSX4O60224 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.92■□□□□ 0.3
SSX4O60224 HTR7P1-201ENST00000538670 1336 ntBASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms