Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 KRT16P1-201ENST00000399124 1418 ntBASIC18.61■□□□□ 0.57
PHGDHO43175 KRT8P3-201ENST00000519669 1449 ntBASIC18.61■□□□□ 0.57
PHGDHO43175 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.61■□□□□ 0.57
PHGDHO43175 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 AC008040.2-201ENST00000461049 708 ntBASIC18.61■□□□□ 0.57
PHGDHO43175 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 RPPH1-201ENST00000516869 333 ntBASIC18.61■□□□□ 0.57
PHGDHO43175 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.61■□□□□ 0.57
PHGDHO43175 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.61■□□□□ 0.57
PHGDHO43175 AC011298.2-201ENST00000617989 482 ntBASIC18.61■□□□□ 0.57
PHGDHO43175 HCG11-201ENST00000411553 5696 ntBASIC18.61■□□□□ 0.57
PHGDHO43175 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
PHGDHO43175 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.61■□□□□ 0.57
PHGDHO43175 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.61■□□□□ 0.57
PHGDHO43175 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
PHGDHO43175 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PHGDHO43175 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PHGDHO43175 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.6■□□□□ 0.57
PHGDHO43175 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.6■□□□□ 0.57
PHGDHO43175 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PHGDHO43175 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.6■□□□□ 0.57
PHGDHO43175 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.59■□□□□ 0.57
PHGDHO43175 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PHGDHO43175 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.59■□□□□ 0.57
PHGDHO43175 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
PHGDHO43175 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.59■□□□□ 0.57
PHGDHO43175 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.59■□□□□ 0.57
PHGDHO43175 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.59■□□□□ 0.57
PHGDHO43175 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.59■□□□□ 0.57
PHGDHO43175 NOC2LP1-202ENST00000452600 2235 ntBASIC18.59■□□□□ 0.57
PHGDHO43175 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.59■□□□□ 0.57
PHGDHO43175 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PHGDHO43175 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PHGDHO43175 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
PHGDHO43175 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
PHGDHO43175 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PHGDHO43175 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.59■□□□□ 0.57
PHGDHO43175 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PHGDHO43175 AL357033.4-201ENST00000617703 1807 ntBASIC18.58■□□□□ 0.57
PHGDHO43175 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
PHGDHO43175 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.57
PHGDHO43175 AC090340.1-201ENST00000620778 4980 ntBASIC18.58■□□□□ 0.57
PHGDHO43175 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PHGDHO43175 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PHGDHO43175 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.57
PHGDHO43175 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
PHGDHO43175 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
PHGDHO43175 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
PHGDHO43175 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PHGDHO43175 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.58■□□□□ 0.57
PHGDHO43175 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.57
PHGDHO43175 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.58■□□□□ 0.57
PHGDHO43175 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PHGDHO43175 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
PHGDHO43175 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PHGDHO43175 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms