Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SMKR1H3BMG3 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 KRT8P8-201ENST00000434750 1448 ntBASIC13.66□□□□□ -0.22
SMKR1H3BMG3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 AL139246.5-201ENST00000606645 996 ntBASIC13.66□□□□□ -0.22
SMKR1H3BMG3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SMKR1H3BMG3 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 NXN-202ENST00000537628 1340 ntTSL 3 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 OR6D1P-203ENST00000641209 4860 ntBASIC13.65□□□□□ -0.22
SMKR1H3BMG3 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 AC124283.5-201ENST00000624661 1809 ntBASIC13.65□□□□□ -0.22
SMKR1H3BMG3 TNRC18P3-201ENST00000441896 2691 ntBASIC13.65□□□□□ -0.22
SMKR1H3BMG3 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
SMKR1H3BMG3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms