Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDP1Q9Y5B0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CTDP1Q9Y5B0 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CTDP1Q9Y5B0 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CTDP1Q9Y5B0 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDP1Q9Y5B0 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.63■■□□□ 1.05
CTDP1Q9Y5B0 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTDP1Q9Y5B0 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
CTDP1Q9Y5B0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 KRT18P48-201ENST00000434763 852 ntBASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 SEC1P-202ENST00000473944 940 ntBASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 AC008556.1-201ENST00000610908 2040 ntBASIC21.62■■□□□ 1.05
CTDP1Q9Y5B0 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 AL157888.1-201ENST00000631930 593 ntBASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 IRX1P1-201ENST00000438849 1838 ntBASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
CTDP1Q9Y5B0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 AL158211.5-201ENST00000623583 2518 ntBASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.6■■□□□ 1.05
CTDP1Q9Y5B0 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 FP475955.4-201ENST00000623131 1990 ntBASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
CTDP1Q9Y5B0 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.58■■□□□ 1.05
CTDP1Q9Y5B0 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CTDP1Q9Y5B0 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
CTDP1Q9Y5B0 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms