Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 AL161938.1-201ENST00000569833 2180 ntBASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
RPH3AQ9Y2J0 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
RPH3AQ9Y2J0 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 AC113347.1-201ENST00000413321 391 ntBASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 KRT18P57-201ENST00000443599 1254 ntBASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 ATP5G1P1-201ENST00000448724 379 ntBASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 AP000974.1-201ENST00000623909 2387 ntBASIC17.14■□□□□ 0.33
RPH3AQ9Y2J0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 AC010203.1-204ENST00000548782 407 ntBASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 AC008622.2-201ENST00000617006 1229 ntBASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RPH3AQ9Y2J0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 HMGA1P5-201ENST00000412453 271 ntBASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RPH3AQ9Y2J0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms