Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
CSMD1Q96PZ7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
CSMD1Q96PZ7 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CSMD1Q96PZ7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 AC112482.1-201ENST00000492080 688 ntBASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 AL596442.2-201ENST00000610240 980 ntBASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 AC121338.2-201ENST00000622535 1744 ntBASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 BNIP3P18-201ENST00000593976 575 ntBASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 AL136038.4-201ENST00000603606 1261 ntBASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CSMD1Q96PZ7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 AC083906.6-201ENST00000641366 219 ntBASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 AC079781.4-201ENST00000641908 219 ntBASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CSMD1Q96PZ7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 TREX1-205ENST00000625293 1783 ntBASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC15.9■□□□□ 0.14
CSMD1Q96PZ7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.14
CSMD1Q96PZ7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.89■□□□□ 0.13
CSMD1Q96PZ7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms