Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 FAM207BP-201ENST00000447172 505 ntBASIC17.92■□□□□ 0.46
VMP1Q96GC9 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VMP1Q96GC9 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
VMP1Q96GC9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 MMP23A-201ENST00000234610 1017 ntBASIC17.91■□□□□ 0.46
VMP1Q96GC9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 AP000692.2-201ENST00000608391 879 ntBASIC17.91■□□□□ 0.46
VMP1Q96GC9 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 CROCCP3-202ENST00000420820 1947 ntBASIC17.91■□□□□ 0.46
VMP1Q96GC9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VMP1Q96GC9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.91■□□□□ 0.46
VMP1Q96GC9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 AC104417.2-201ENST00000562989 1793 ntBASIC17.9■□□□□ 0.46
VMP1Q96GC9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VMP1Q96GC9 MIR1238-201ENST00000408483 83 ntBASIC17.9■□□□□ 0.46
VMP1Q96GC9 AC091390.4-202ENST00000476426 537 ntBASIC17.9■□□□□ 0.46
VMP1Q96GC9 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.9■□□□□ 0.46
VMP1Q96GC9 FITM1-202ENST00000559294 800 ntBASIC17.9■□□□□ 0.46
VMP1Q96GC9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms