Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 AL450487.1-201ENST00000426799 995 ntBASIC20.27■□□□□ 0.84
VPS52Q8N1B4 TSPY23P-201ENST00000440136 739 ntBASIC20.27■□□□□ 0.84
VPS52Q8N1B4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 CLEC4GP1-201ENST00000596555 870 ntBASIC20.27■□□□□ 0.84
VPS52Q8N1B4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS52Q8N1B4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS52Q8N1B4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS52Q8N1B4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.27■□□□□ 0.83
VPS52Q8N1B4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 AC018445.3-201ENST00000624177 1945 ntBASIC20.26■□□□□ 0.83
VPS52Q8N1B4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VPS52Q8N1B4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS52Q8N1B4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 TPM4P1-201ENST00000436100 807 ntBASIC20.24■□□□□ 0.83
VPS52Q8N1B4 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms