Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 AC010240.3-201ENST00000607688 395 ntBASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 Z98044.1-201ENST00000632503 1764 ntBASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 AC083906.6-201ENST00000641366 219 ntBASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC60Q8IWA6 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC60Q8IWA6 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCDC60Q8IWA6 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CCDC60Q8IWA6 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms