Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CCDC40Q4G0X9 KRT8P3-201ENST00000519669 1449 ntBASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 CKBP1-201ENST00000565489 1086 ntBASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 CD177P1-201ENST00000606252 935 ntBASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC40Q4G0X9 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 AC068587.9-201ENST00000641814 219 ntBASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 FSCN1P1-201ENST00000568912 1481 ntBASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC40Q4G0X9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 KRT8P32-201ENST00000512863 1461 ntBASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 GCSHP5-201ENST00000443090 522 ntBASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC40Q4G0X9 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 MTMR9LP-203ENST00000426597 1545 ntBASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 UBE2SP1-201ENST00000450587 669 ntBASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.58■□□□□ 0.89
CCDC40Q4G0X9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.58■□□□□ 0.88
CCDC40Q4G0X9 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms