Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.72■□□□□ 0.27
H3F3AP84243 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
H3F3AP84243 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.72■□□□□ 0.27
H3F3AP84243 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
H3F3AP84243 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
H3F3AP84243 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.72■□□□□ 0.27
H3F3AP84243 AL512604.3-201ENST00000569583 964 ntBASIC16.72■□□□□ 0.27
H3F3AP84243 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
H3F3AP84243 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
H3F3AP84243 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 KRT8P45-201ENST00000414328 1447 ntBASIC16.71■□□□□ 0.27
H3F3AP84243 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
H3F3AP84243 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 SLC25A3P1-201ENST00000443844 931 ntBASIC16.71■□□□□ 0.27
H3F3AP84243 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 KRT18P41-201ENST00000518924 1277 ntBASIC16.71■□□□□ 0.27
H3F3AP84243 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.71■□□□□ 0.27
H3F3AP84243 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.71■□□□□ 0.27
H3F3AP84243 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.71■□□□□ 0.27
H3F3AP84243 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 LINC01023-201ENST00000606054 436 ntBASIC16.71■□□□□ 0.27
H3F3AP84243 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
H3F3AP84243 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.71■□□□□ 0.27
H3F3AP84243 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
H3F3AP84243 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
H3F3AP84243 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.7■□□□□ 0.26
H3F3AP84243 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
H3F3AP84243 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.7■□□□□ 0.26
H3F3AP84243 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.7■□□□□ 0.26
H3F3AP84243 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.7■□□□□ 0.26
H3F3AP84243 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
H3F3AP84243 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.7■□□□□ 0.26
H3F3AP84243 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
H3F3AP84243 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.7■□□□□ 0.26
H3F3AP84243 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.7■□□□□ 0.26
H3F3AP84243 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
H3F3AP84243 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
H3F3AP84243 ANO7L1-203ENST00000602586 1720 ntBASIC16.7■□□□□ 0.26
H3F3AP84243 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
H3F3AP84243 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
H3F3AP84243 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.69■□□□□ 0.26
H3F3AP84243 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
H3F3AP84243 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.69■□□□□ 0.26
H3F3AP84243 AC036111.1-201ENST00000533973 1582 ntBASIC16.69■□□□□ 0.26
H3F3AP84243 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 AL138781.2-201ENST00000617896 1843 ntBASIC16.69■□□□□ 0.26
H3F3AP84243 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.69■□□□□ 0.26
H3F3AP84243 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms