Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDX1P47902 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CDX1P47902 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.27■□□□□ 0.03
CDX1P47902 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDX1P47902 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
CDX1P47902 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDX1P47902 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC15.27■□□□□ 0.03
CDX1P47902 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC15.27■□□□□ 0.03
CDX1P47902 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.26■□□□□ 0.03
CDX1P47902 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CDX1P47902 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC15.26■□□□□ 0.03
CDX1P47902 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 AL391005.1-201ENST00000623953 2435 ntBASIC15.26■□□□□ 0.03
CDX1P47902 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CDX1P47902 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CDX1P47902 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.26■□□□□ 0.03
CDX1P47902 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC15.26■□□□□ 0.03
CDX1P47902 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC15.26■□□□□ 0.03
CDX1P47902 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
CDX1P47902 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15.26■□□□□ 0.03
CDX1P47902 AL353708.3-201ENST00000610272 989 ntBASIC15.26■□□□□ 0.03
CDX1P47902 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.26■□□□□ 0.03
CDX1P47902 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC15.26■□□□□ 0.03
CDX1P47902 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
CDX1P47902 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.26■□□□□ 0.03
CDX1P47902 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CDX1P47902 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CDX1P47902 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC15.25■□□□□ 0.03
CDX1P47902 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
CDX1P47902 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.25■□□□□ 0.03
CDX1P47902 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.25■□□□□ 0.03
CDX1P47902 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.25■□□□□ 0.03
CDX1P47902 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.25■□□□□ 0.03
CDX1P47902 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CDX1P47902 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CDX1P47902 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC15.25■□□□□ 0.03
CDX1P47902 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC15.25■□□□□ 0.03
CDX1P47902 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.25■□□□□ 0.03
CDX1P47902 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 AP002982.1-201ENST00000492365 877 ntBASIC15.25■□□□□ 0.03
CDX1P47902 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.25■□□□□ 0.03
CDX1P47902 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CDX1P47902 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.25■□□□□ 0.03
CDX1P47902 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC15.25■□□□□ 0.03
CDX1P47902 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC15.25■□□□□ 0.03
CDX1P47902 MIR4785-201ENST00000585005 73 ntBASIC15.25■□□□□ 0.03
CDX1P47902 AC073195.1-201ENST00000607241 877 ntBASIC15.25■□□□□ 0.03
CDX1P47902 AC113410.3-201ENST00000623366 203 ntBASIC15.25■□□□□ 0.03
CDX1P47902 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC15.25■□□□□ 0.03
CDX1P47902 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 BICD1-207ENST00000551848 1962 ntBASIC15.25■□□□□ 0.03
CDX1P47902 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 AC090164.3-201ENST00000610780 2143 ntBASIC15.25■□□□□ 0.03
CDX1P47902 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CDX1P47902 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
CDX1P47902 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CDX1P47902 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.24■□□□□ 0.03
CDX1P47902 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms