Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
HNF4AP41235 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.17■□□□□ 0.5
HNF4AP41235 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.17■□□□□ 0.5
HNF4AP41235 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HNF4AP41235 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.17■□□□□ 0.5
HNF4AP41235 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.16■□□□□ 0.5
HNF4AP41235 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.16■□□□□ 0.5
HNF4AP41235 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.16■□□□□ 0.5
HNF4AP41235 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HNF4AP41235 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.16■□□□□ 0.5
HNF4AP41235 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.16■□□□□ 0.5
HNF4AP41235 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
HNF4AP41235 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HNF4AP41235 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.16■□□□□ 0.5
HNF4AP41235 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.16■□□□□ 0.5
HNF4AP41235 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.16■□□□□ 0.5
HNF4AP41235 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.16■□□□□ 0.5
HNF4AP41235 RBM17P1-201ENST00000453646 1190 ntBASIC18.16■□□□□ 0.5
HNF4AP41235 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.16■□□□□ 0.5
HNF4AP41235 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
HNF4AP41235 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.16■□□□□ 0.5
HNF4AP41235 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.16■□□□□ 0.5
HNF4AP41235 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.16■□□□□ 0.5
HNF4AP41235 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
HNF4AP41235 AP000525.1-201ENST00000608286 694 ntBASIC18.16■□□□□ 0.5
HNF4AP41235 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HNF4AP41235 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HNF4AP41235 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HNF4AP41235 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.15■□□□□ 0.5
HNF4AP41235 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.15■□□□□ 0.5
HNF4AP41235 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.15■□□□□ 0.5
HNF4AP41235 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HNF4AP41235 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.15■□□□□ 0.5
HNF4AP41235 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.15■□□□□ 0.5
HNF4AP41235 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 UNC93B2-201ENST00000285383 730 ntBASIC18.15■□□□□ 0.5
HNF4AP41235 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.15■□□□□ 0.5
HNF4AP41235 AL390955.1-201ENST00000428694 934 ntBASIC18.15■□□□□ 0.5
HNF4AP41235 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HNF4AP41235 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.15■□□□□ 0.5
HNF4AP41235 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.15■□□□□ 0.5
HNF4AP41235 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.15■□□□□ 0.5
HNF4AP41235 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
HNF4AP41235 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
HNF4AP41235 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.15■□□□□ 0.5
HNF4AP41235 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 AC096733.2-201ENST00000609937 1394 ntBASIC18.15■□□□□ 0.5
HNF4AP41235 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
HNF4AP41235 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.15■□□□□ 0.5
HNF4AP41235 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HNF4AP41235 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.15■□□□□ 0.5
HNF4AP41235 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.15■□□□□ 0.5
HNF4AP41235 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HNF4AP41235 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
HNF4AP41235 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HNF4AP41235 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.14■□□□□ 0.5
HNF4AP41235 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
HNF4AP41235 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.14■□□□□ 0.49
HNF4AP41235 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
HNF4AP41235 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.14■□□□□ 0.49
HNF4AP41235 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.14■□□□□ 0.49
HNF4AP41235 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.14■□□□□ 0.49
HNF4AP41235 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HNF4AP41235 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.14■□□□□ 0.49
HNF4AP41235 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.14■□□□□ 0.49
HNF4AP41235 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
HNF4AP41235 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HNF4AP41235 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms