Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PTPN4P29074 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.8■□□□□ 0.6
PTPN4P29074 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.8■□□□□ 0.6
PTPN4P29074 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTPN4P29074 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
PTPN4P29074 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.79■□□□□ 0.6
PTPN4P29074 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.79■□□□□ 0.6
PTPN4P29074 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.79■□□□□ 0.6
PTPN4P29074 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN4P29074 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN4P29074 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
PTPN4P29074 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.79■□□□□ 0.6
PTPN4P29074 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.79■□□□□ 0.6
PTPN4P29074 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.79■□□□□ 0.6
PTPN4P29074 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN4P29074 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.79■□□□□ 0.6
PTPN4P29074 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
PTPN4P29074 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.79■□□□□ 0.6
PTPN4P29074 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN4P29074 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
PTPN4P29074 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.79■□□□□ 0.6
PTPN4P29074 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PTPN4P29074 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.78■□□□□ 0.6
PTPN4P29074 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
PTPN4P29074 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.78■□□□□ 0.6
PTPN4P29074 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 HTR7P1-201ENST00000538670 1336 ntBASIC18.78■□□□□ 0.6
PTPN4P29074 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
PTPN4P29074 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.78■□□□□ 0.6
PTPN4P29074 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
PTPN4P29074 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
PTPN4P29074 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
PTPN4P29074 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.78■□□□□ 0.6
PTPN4P29074 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PTPN4P29074 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.78■□□□□ 0.6
PTPN4P29074 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PTPN4P29074 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.78■□□□□ 0.6
PTPN4P29074 AL353807.1-201ENST00000427475 662 ntBASIC18.78■□□□□ 0.6
PTPN4P29074 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.78■□□□□ 0.6
PTPN4P29074 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.78■□□□□ 0.6
PTPN4P29074 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.78■□□□□ 0.6
PTPN4P29074 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.78■□□□□ 0.6
PTPN4P29074 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.78■□□□□ 0.6
PTPN4P29074 AL031963.3-201ENST00000606441 850 ntBASIC18.78■□□□□ 0.6
PTPN4P29074 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.78■□□□□ 0.6
PTPN4P29074 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
PTPN4P29074 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PTPN4P29074 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
PTPN4P29074 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.77■□□□□ 0.6
PTPN4P29074 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
PTPN4P29074 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.77■□□□□ 0.6
PTPN4P29074 PRORSD1P-202ENST00000563365 2154 ntBASIC18.77■□□□□ 0.6
PTPN4P29074 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
PTPN4P29074 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.77■□□□□ 0.6
PTPN4P29074 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.77■□□□□ 0.6
PTPN4P29074 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 FAM210CP-201ENST00000445714 574 ntBASIC18.77■□□□□ 0.6
PTPN4P29074 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.77■□□□□ 0.6
PTPN4P29074 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.77■□□□□ 0.6
PTPN4P29074 AF186192.3-201ENST00000583427 947 ntBASIC18.77■□□□□ 0.6
PTPN4P29074 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
PTPN4P29074 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
PTPN4P29074 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms