Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSH3P20585 CROCCP3-202ENST00000420820 1947 ntBASIC18.62■□□□□ 0.57
MSH3P20585 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.62■□□□□ 0.57
MSH3P20585 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 INGX-201ENST00000359239 846 ntBASIC18.62■□□□□ 0.57
MSH3P20585 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.62■□□□□ 0.57
MSH3P20585 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.62■□□□□ 0.57
MSH3P20585 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.62■□□□□ 0.57
MSH3P20585 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
MSH3P20585 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.62■□□□□ 0.57
MSH3P20585 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
MSH3P20585 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 RCC2P3-201ENST00000418112 1537 ntBASIC18.62■□□□□ 0.57
MSH3P20585 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
MSH3P20585 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
MSH3P20585 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.62■□□□□ 0.57
MSH3P20585 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSH3P20585 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MSH3P20585 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.61■□□□□ 0.57
MSH3P20585 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
MSH3P20585 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
MSH3P20585 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.61■□□□□ 0.57
MSH3P20585 MCCD1P1-208ENST00000445732 328 ntBASIC18.61■□□□□ 0.57
MSH3P20585 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.61■□□□□ 0.57
MSH3P20585 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.61■□□□□ 0.57
MSH3P20585 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.61■□□□□ 0.57
MSH3P20585 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.61■□□□□ 0.57
MSH3P20585 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.61■□□□□ 0.57
MSH3P20585 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.61■□□□□ 0.57
MSH3P20585 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
MSH3P20585 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
MSH3P20585 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MSH3P20585 AC097493.4-201ENST00000641197 219 ntBASIC18.61■□□□□ 0.57
MSH3P20585 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.61■□□□□ 0.57
MSH3P20585 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MSH3P20585 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MSH3P20585 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSH3P20585 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
MSH3P20585 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.6■□□□□ 0.57
MSH3P20585 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.6■□□□□ 0.57
MSH3P20585 KRT8P32-201ENST00000512863 1461 ntBASIC18.6■□□□□ 0.57
MSH3P20585 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
MSH3P20585 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.6■□□□□ 0.57
MSH3P20585 AL023284.2-201ENST00000405850 579 ntBASIC18.6■□□□□ 0.57
MSH3P20585 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.6■□□□□ 0.57
MSH3P20585 AC083906.6-201ENST00000641366 219 ntBASIC18.6■□□□□ 0.57
MSH3P20585 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
MSH3P20585 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.6■□□□□ 0.57
MSH3P20585 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
MSH3P20585 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.6■□□□□ 0.57
MSH3P20585 GPAT2P1-201ENST00000444924 1672 ntBASIC18.6■□□□□ 0.57
MSH3P20585 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.6■□□□□ 0.57
MSH3P20585 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSH3P20585 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms