Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.35■□□□□ 0.69
VCANP13611 Z92544.3-201ENST00000624747 417 ntBASIC19.35■□□□□ 0.69
VCANP13611 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.35■□□□□ 0.69
VCANP13611 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VCANP13611 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VCANP13611 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
VCANP13611 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.35■□□□□ 0.69
VCANP13611 UNC93B6-202ENST00000528242 690 ntBASIC19.35■□□□□ 0.69
VCANP13611 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.34■□□□□ 0.69
VCANP13611 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCANP13611 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCANP13611 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.34■□□□□ 0.69
VCANP13611 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCANP13611 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.34■□□□□ 0.69
VCANP13611 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
VCANP13611 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.34■□□□□ 0.69
VCANP13611 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.34■□□□□ 0.69
VCANP13611 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.34■□□□□ 0.69
VCANP13611 AC093512.1-201ENST00000617969 520 ntBASIC19.34■□□□□ 0.69
VCANP13611 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCANP13611 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCANP13611 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCANP13611 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.34■□□□□ 0.69
VCANP13611 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VCANP13611 AL139400.1-201ENST00000366220 510 ntBASIC19.34■□□□□ 0.69
VCANP13611 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VCANP13611 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
VCANP13611 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.34■□□□□ 0.69
VCANP13611 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VCANP13611 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VCANP13611 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.33■□□□□ 0.69
VCANP13611 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.33■□□□□ 0.69
VCANP13611 POM121L3P-201ENST00000419331 1163 ntBASIC19.33■□□□□ 0.69
VCANP13611 RN7SL606P-201ENST00000472779 293 ntBASIC19.33■□□□□ 0.69
VCANP13611 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.33■□□□□ 0.69
VCANP13611 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.33■□□□□ 0.69
VCANP13611 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VCANP13611 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.33■□□□□ 0.69
VCANP13611 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VCANP13611 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.33■□□□□ 0.69
VCANP13611 AC087641.1-201ENST00000557561 1021 ntBASIC19.33■□□□□ 0.69
VCANP13611 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.33■□□□□ 0.69
VCANP13611 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
VCANP13611 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VCANP13611 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCANP13611 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.33■□□□□ 0.68
VCANP13611 AC005498.2-205ENST00000593218 784 ntBASIC19.33■□□□□ 0.68
VCANP13611 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.33■□□□□ 0.68
VCANP13611 AL691432.2-201ENST00000607222 2038 ntBASIC19.33■□□□□ 0.68
VCANP13611 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCANP13611 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VCANP13611 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCANP13611 AC114341.1-201ENST00000618070 349 ntBASIC19.32■□□□□ 0.68
VCANP13611 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.32■□□□□ 0.68
VCANP13611 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.32■□□□□ 0.68
VCANP13611 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCANP13611 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCANP13611 IGHGP-201ENST00000390555 1178 ntBASIC19.32■□□□□ 0.68
VCANP13611 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.32■□□□□ 0.68
VCANP13611 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.32■□□□□ 0.68
VCANP13611 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCANP13611 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.32■□□□□ 0.68
VCANP13611 HEIH-201ENST00000623091 1652 ntBASIC19.32■□□□□ 0.68
VCANP13611 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.32■□□□□ 0.68
VCANP13611 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
VCANP13611 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.32■□□□□ 0.68
VCANP13611 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.32■□□□□ 0.68
VCANP13611 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.32■□□□□ 0.68
VCANP13611 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
VCANP13611 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VCANP13611 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCANP13611 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.31■□□□□ 0.68
VCANP13611 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.31■□□□□ 0.68
VCANP13611 RNA5SP416-201ENST00000516838 111 ntBASIC19.31■□□□□ 0.68
VCANP13611 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.31■□□□□ 0.68
VCANP13611 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCANP13611 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.31■□□□□ 0.68
VCANP13611 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCANP13611 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.31■□□□□ 0.68
VCANP13611 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.31■□□□□ 0.68
VCANP13611 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
VCANP13611 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCANP13611 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCANP13611 MCCD1P2-201ENST00000423228 335 ntBASIC19.31■□□□□ 0.68
VCANP13611 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCANP13611 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.31■□□□□ 0.68
VCANP13611 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.31■□□□□ 0.68
VCANP13611 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.31■□□□□ 0.68
VCANP13611 MIR6752-201ENST00000618442 71 ntBASIC19.31■□□□□ 0.68
VCANP13611 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.31■□□□□ 0.68
VCANP13611 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VCANP13611 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.31■□□□□ 0.68
VCANP13611 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCANP13611 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VCANP13611 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VCANP13611 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms