Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PCNAP12004 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PCNAP12004 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.24■□□□□ 0.51
PCNAP12004 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
PCNAP12004 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.24■□□□□ 0.51
PCNAP12004 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.24■□□□□ 0.51
PCNAP12004 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.24■□□□□ 0.51
PCNAP12004 MIR6786-201ENST00000616843 113 ntBASIC18.24■□□□□ 0.51
PCNAP12004 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PCNAP12004 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.24■□□□□ 0.51
PCNAP12004 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
PCNAP12004 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PCNAP12004 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.23■□□□□ 0.51
PCNAP12004 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.23■□□□□ 0.51
PCNAP12004 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.23■□□□□ 0.51
PCNAP12004 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.23■□□□□ 0.51
PCNAP12004 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PCNAP12004 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 RPS2P55-201ENST00000397318 883 ntBASIC18.23■□□□□ 0.51
PCNAP12004 FAM207BP-201ENST00000447172 505 ntBASIC18.23■□□□□ 0.51
PCNAP12004 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 AC011506.1-201ENST00000474329 610 ntBASIC18.23■□□□□ 0.51
PCNAP12004 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.23■□□□□ 0.51
PCNAP12004 AC107956.1-201ENST00000494359 873 ntBASIC18.23■□□□□ 0.51
PCNAP12004 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PCNAP12004 PRSS44-201ENST00000515154 1146 ntBASIC18.23■□□□□ 0.51
PCNAP12004 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.23■□□□□ 0.51
PCNAP12004 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.23■□□□□ 0.51
PCNAP12004 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.23■□□□□ 0.51
PCNAP12004 TMEM191A-211ENST00000637163 1067 ntBASIC18.23■□□□□ 0.51
PCNAP12004 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PCNAP12004 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.23■□□□□ 0.51
PCNAP12004 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
PCNAP12004 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.23■□□□□ 0.51
PCNAP12004 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.23■□□□□ 0.51
PCNAP12004 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PCNAP12004 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.23■□□□□ 0.51
PCNAP12004 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.22■□□□□ 0.51
PCNAP12004 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.22■□□□□ 0.51
PCNAP12004 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.22■□□□□ 0.51
PCNAP12004 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 AC008040.2-201ENST00000461049 708 ntBASIC18.22■□□□□ 0.51
PCNAP12004 B3GAT3P1-201ENST00000471720 806 ntBASIC18.22■□□□□ 0.51
PCNAP12004 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.22■□□□□ 0.51
PCNAP12004 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.22■□□□□ 0.51
PCNAP12004 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.22■□□□□ 0.51
PCNAP12004 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.22■□□□□ 0.51
PCNAP12004 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.22■□□□□ 0.51
PCNAP12004 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PCNAP12004 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCNAP12004 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCNAP12004 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCNAP12004 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
PCNAP12004 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCNAP12004 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.21■□□□□ 0.51
PCNAP12004 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PCNAP12004 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCNAP12004 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.21■□□□□ 0.51
PCNAP12004 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCNAP12004 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PCNAP12004 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms