Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.94■□□□□ 0.46
SEMA3DO95025 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 AP003071.4-201ENST00000562276 1284 ntBASIC17.94■□□□□ 0.46
SEMA3DO95025 AP005242.2-201ENST00000580065 1175 ntBASIC17.94■□□□□ 0.46
SEMA3DO95025 MIR4785-201ENST00000585005 73 ntBASIC17.94■□□□□ 0.46
SEMA3DO95025 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.94■□□□□ 0.46
SEMA3DO95025 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
SEMA3DO95025 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.94■□□□□ 0.46
SEMA3DO95025 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
SEMA3DO95025 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.93■□□□□ 0.46
SEMA3DO95025 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 MTMR9LP-203ENST00000426597 1545 ntBASIC17.93■□□□□ 0.46
SEMA3DO95025 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
SEMA3DO95025 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.93■□□□□ 0.46
SEMA3DO95025 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.93■□□□□ 0.46
SEMA3DO95025 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.93■□□□□ 0.46
SEMA3DO95025 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.93■□□□□ 0.46
SEMA3DO95025 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.93■□□□□ 0.46
SEMA3DO95025 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.93■□□□□ 0.46
SEMA3DO95025 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SEMA3DO95025 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.93■□□□□ 0.46
SEMA3DO95025 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SEMA3DO95025 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SEMA3DO95025 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SEMA3DO95025 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.92■□□□□ 0.46
SEMA3DO95025 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
SEMA3DO95025 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
SEMA3DO95025 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
SEMA3DO95025 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.92■□□□□ 0.46
SEMA3DO95025 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.92■□□□□ 0.46
SEMA3DO95025 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SEMA3DO95025 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.92■□□□□ 0.46
SEMA3DO95025 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SEMA3DO95025 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.92■□□□□ 0.46
SEMA3DO95025 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.91■□□□□ 0.46
SEMA3DO95025 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SEMA3DO95025 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SEMA3DO95025 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.91■□□□□ 0.46
SEMA3DO95025 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.91■□□□□ 0.46
SEMA3DO95025 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.91■□□□□ 0.46
SEMA3DO95025 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.91■□□□□ 0.46
SEMA3DO95025 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 RCC2P3-201ENST00000418112 1537 ntBASIC17.91■□□□□ 0.46
SEMA3DO95025 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SEMA3DO95025 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.91■□□□□ 0.46
SEMA3DO95025 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
SEMA3DO95025 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SEMA3DO95025 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.91■□□□□ 0.46
SEMA3DO95025 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SEMA3DO95025 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms