Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 AC092647.4-201ENST00000457211 535 ntBASIC25.37■■□□□ 1.65
MSH5O43196 AC104629.2-201ENST00000468627 598 ntBASIC25.37■■□□□ 1.65
MSH5O43196 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC25.37■■□□□ 1.65
MSH5O43196 ACYP1-204ENST00000555135 639 ntTSL 3 BASIC25.37■■□□□ 1.65
MSH5O43196 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC25.37■■□□□ 1.65
MSH5O43196 AC005951.1-201ENST00000576706 485 ntBASIC25.37■■□□□ 1.65
MSH5O43196 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC25.37■■□□□ 1.65
MSH5O43196 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 AP000550.4-202ENST00000639755 178 ntBASIC25.37■■□□□ 1.65
MSH5O43196 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
MSH5O43196 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC25.37■■□□□ 1.65
MSH5O43196 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
MSH5O43196 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC25.36■■□□□ 1.65
MSH5O43196 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
MSH5O43196 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH5O43196 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH5O43196 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH5O43196 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
MSH5O43196 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC25.36■■□□□ 1.65
MSH5O43196 PP7080-204ENST00000510714 601 ntTSL 3 BASIC25.36■■□□□ 1.65
MSH5O43196 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
MSH5O43196 CARD8-224ENST00000522431 622 ntTSL 2 BASIC25.36■■□□□ 1.65
MSH5O43196 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
MSH5O43196 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC25.36■■□□□ 1.65
MSH5O43196 AC016252.1-201ENST00000609721 474 ntBASIC25.36■■□□□ 1.65
MSH5O43196 VPS72-207ENST00000640458 689 ntTSL 5 BASIC25.36■■□□□ 1.65
MSH5O43196 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
MSH5O43196 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC25.36■■□□□ 1.65
MSH5O43196 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC25.36■■□□□ 1.65
MSH5O43196 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC25.36■■□□□ 1.65
MSH5O43196 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH5O43196 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC25.36■■□□□ 1.65
MSH5O43196 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC25.36■■□□□ 1.65
MSH5O43196 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
MSH5O43196 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
MSH5O43196 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC25.35■■□□□ 1.65
MSH5O43196 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 HLA-G-202ENST00000376815 851 ntBASIC25.35■■□□□ 1.65
MSH5O43196 HLA-G-203ENST00000376818 1127 ntBASIC25.35■■□□□ 1.65
MSH5O43196 RNF152P1-201ENST00000397754 604 ntBASIC25.35■■□□□ 1.65
MSH5O43196 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC25.35■■□□□ 1.65
MSH5O43196 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC25.35■■□□□ 1.65
MSH5O43196 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC25.35■■□□□ 1.65
MSH5O43196 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC25.35■■□□□ 1.65
MSH5O43196 LYRM7-203ENST00000510516 604 ntTSL 2 BASIC25.35■■□□□ 1.65
MSH5O43196 AC018953.1-201ENST00000523265 730 ntTSL 2 BASIC25.35■■□□□ 1.65
MSH5O43196 MTND4LP18-201ENST00000526864 291 ntBASIC25.35■■□□□ 1.65
MSH5O43196 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC25.35■■□□□ 1.65
MSH5O43196 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC25.35■■□□□ 1.65
MSH5O43196 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC25.35■■□□□ 1.65
MSH5O43196 ABBA01031674.1-201ENST00000635145 728 ntBASIC25.35■■□□□ 1.65
MSH5O43196 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC25.35■■□□□ 1.65
MSH5O43196 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 AC093536.2-201ENST00000565257 1406 ntBASIC25.35■■□□□ 1.65
MSH5O43196 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC25.35■■□□□ 1.65
MSH5O43196 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH5O43196 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC25.35■■□□□ 1.65
MSH5O43196 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
MSH5O43196 RABGGTB-201ENST00000319942 1496 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH5O43196 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH5O43196 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC25.34■■□□□ 1.65
MSH5O43196 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH5O43196 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH5O43196 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH5O43196 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH5O43196 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
MSH5O43196 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC25.34■■□□□ 1.65
MSH5O43196 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC25.34■■□□□ 1.65
MSH5O43196 LUZP4P1-201ENST00000415420 344 ntBASIC25.34■■□□□ 1.65
MSH5O43196 USP9YP28-201ENST00000435142 589 ntBASIC25.34■■□□□ 1.65
MSH5O43196 PPP1R14BP5-201ENST00000440334 435 ntBASIC25.34■■□□□ 1.65
MSH5O43196 MTND4P25-201ENST00000441039 533 ntBASIC25.34■■□□□ 1.65
MSH5O43196 B3GAT3P1-201ENST00000471720 806 ntBASIC25.34■■□□□ 1.65
MSH5O43196 AC091390.4-202ENST00000476426 537 ntBASIC25.34■■□□□ 1.65
MSH5O43196 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC25.34■■□□□ 1.65
MSH5O43196 AC007494.2-201ENST00000563757 764 ntTSL 3 BASIC25.34■■□□□ 1.65
MSH5O43196 AC011447.3-205ENST00000592022 1268 ntTSL 3 BASIC25.34■■□□□ 1.65
MSH5O43196 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC25.34■■□□□ 1.65
MSH5O43196 MYC-208ENST00000641036 567 ntBASIC25.34■■□□□ 1.65
MSH5O43196 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC25.34■■□□□ 1.65
MSH5O43196 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH5O43196 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
MSH5O43196 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
MSH5O43196 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH5O43196 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC25.34■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms