RNA–Protein interactions for RNA: ENST00000435142.1

USP9YP28-201, Transcript of USP9Y pseudogene 28, humanhuman

BASIC

Gene USP9YP28, Length 589 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP9YP28-201ENST00000435142 AEBP2Q6ZN18 517 aaPredicted RBP33.85■■■■□ 3.01
USP9YP28-201ENST00000435142 CHIC1Q5VXU3 224 aa31.94■■■□□ 2.7
USP9YP28-201ENST00000435142 SENP3Q9H4L4 574 aaPredicted RBP28.93■■■□□ 2.22
USP9YP28-201ENST00000435142 PHF23Q9BUL5 403 aaPredicted RBP28.54■■■□□ 2.16
USP9YP28-201ENST00000435142 FOXD1Q16676 465 aa26.99■■□□□ 1.91
USP9YP28-201ENST00000435142 PLPPR3Q6T4P5 718 aa25.43■■□□□ 1.66
USP9YP28-201ENST00000435142 MSH5O43196 834 aa25.34■■□□□ 1.65
USP9YP28-201ENST00000435142 PIAS4Q8N2W9 510 aaPredicted RBP25.17■■□□□ 1.62
USP9YP28-201ENST00000435142 POTEDQ86YR6 584 aa25.11■■□□□ 1.61
USP9YP28-201ENST00000435142 PPP6R1Q9UPN7 881 aa25.08■■□□□ 1.61
USP9YP28-201ENST00000435142 ADRA2BP18089 450 aa24.99■■□□□ 1.59
USP9YP28-201ENST00000435142 MAPK8IP2Q13387 824 aaPredicted RBP23.02■■□□□ 1.28
USP9YP28-201ENST00000435142 DMRT2Q9Y5R5 561 aa22.9■■□□□ 1.26
USP9YP28-201ENST00000435142 SCAF1Q9H7N4 1312 aaKnown RBP22.88■■□□□ 1.25
USP9YP28-201ENST00000435142 PPP4R3CPQ6ZMV5 832 aa22.28■■□□□ 1.16
USP9YP28-201ENST00000435142 DCAF8L1A6NGE4 600 aa22.01■■□□□ 1.11
USP9YP28-201ENST00000435142 HOXD11P31277 338 aaPredicted RBP21.97■■□□□ 1.11
USP9YP28-201ENST00000435142 CACNB1Q02641 598 aaPredicted RBP21.91■■□□□ 1.1
USP9YP28-201ENST00000435142 CNKSR2Q8WXI2 1034 aa21.91■■□□□ 1.1
USP9YP28-201ENST00000435142 RNF216Q9NWF9 866 aaPredicted RBP21.75■■□□□ 1.07
USP9YP28-201ENST00000435142 RNF39Q9H2S5 420 aa21.6■■□□□ 1.05
USP9YP28-201ENST00000435142 NCBP3Q53F19 620 aaKnown RBP21.37■■□□□ 1.01
USP9YP28-201ENST00000435142 C1QBPQ07021 282 aaKnown RBP21.29■■□□□ 1
USP9YP28-201ENST00000435142 DNAJC5BQ9UF47 199 aa21.25■□□□□ 0.99
USP9YP28-201ENST00000435142 NPM3O75607 178 aaKnown RBP21.03■□□□□ 0.96
USP9YP28-201ENST00000435142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.96■□□□□ 0.95
USP9YP28-201ENST00000435142 U3KPZ7 1027 aaPredicted RBP20.46■□□□□ 0.87
USP9YP28-201ENST00000435142 KCNA4P22459 653 aa20.43■□□□□ 0.86
USP9YP28-201ENST00000435142 SPINK5Q9NQ38 1064 aaPredicted RBP20.25■□□□□ 0.83
USP9YP28-201ENST00000435142 CAPN15O75808 1086 aa20.24■□□□□ 0.83
USP9YP28-201ENST00000435142 DSG3P32926 999 aa20.16■□□□□ 0.82
USP9YP28-201ENST00000435142 SLC4A2P04920 1241 aa20.14■□□□□ 0.81
USP9YP28-201ENST00000435142 APLP2Q06481 763 aa19.9■□□□□ 0.78
USP9YP28-201ENST00000435142 TRHP20396 242 aaPredicted RBP19.87■□□□□ 0.77
USP9YP28-201ENST00000435142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.83■□□□□ 0.77
USP9YP28-201ENST00000435142 HNRNPUL2Q1KMD3 747 aaKnown RBP19.83■□□□□ 0.77
USP9YP28-201ENST00000435142 ZNF219Q9P2Y4 722 aaPredicted RBP19.8■□□□□ 0.76
USP9YP28-201ENST00000435142 ABCB7O75027 752 aa19.74■□□□□ 0.75
USP9YP28-201ENST00000435142 SAMD1Q6SPF0 538 aaPredicted RBP19.7■□□□□ 0.74
USP9YP28-201ENST00000435142 POTEHQ6S545 545 aa19.64■□□□□ 0.73
USP9YP28-201ENST00000435142 MYCNP04198 464 aaPredicted RBP19.46■□□□□ 0.71
USP9YP28-201ENST00000435142 POLA2Q14181 598 aa19.29■□□□□ 0.68
USP9YP28-201ENST00000435142 RBM42Q9BTD8 480 aaKnown RBP19.25■□□□□ 0.67
USP9YP28-201ENST00000435142 SLC4A1APQ9BWU0 796 aaKnown RBP19.25■□□□□ 0.67
USP9YP28-201ENST00000435142 FOXD4L1Q9NU39 408 aa19.13■□□□□ 0.65
USP9YP28-201ENST00000435142 ATF5Q9Y2D1 282 aaPredicted RBP19.03■□□□□ 0.64
USP9YP28-201ENST00000435142 CHRDL2Q6WN34 429 aa18.91■□□□□ 0.62
USP9YP28-201ENST00000435142 ZBTB12Q9Y330 459 aaPredicted RBP18.86■□□□□ 0.61
USP9YP28-201ENST00000435142 AKT1S1Q96B36 256 aa18.76■□□□□ 0.59
USP9YP28-201ENST00000435142 ZBTB22O15209 634 aa18.75■□□□□ 0.59
USP9YP28-201ENST00000435142 OSCARQ8IYS5 282 aa18.65■□□□□ 0.58
USP9YP28-201ENST00000435142 REM2Q8IYK8 340 aaPredicted RBP18.59■□□□□ 0.57
USP9YP28-201ENST00000435142 ATXN8OSP0DMR3 200 aa18.58■□□□□ 0.56
USP9YP28-201ENST00000435142 PIP4P2Q8N4L2 257 aa18.42■□□□□ 0.54
USP9YP28-201ENST00000435142 PITPNM1O00562 1244 aa18.37■□□□□ 0.53
USP9YP28-201ENST00000435142 FBLN2P98095 1184 aa18.33■□□□□ 0.52
USP9YP28-201ENST00000435142 SP7Q8TDD2 431 aaPredicted RBP18.3■□□□□ 0.52
USP9YP28-201ENST00000435142 FXR2P51116 673 aaKnown RBP eCLIP18.27■□□□□ 0.52
USP9YP28-201ENST00000435142 SPDYE2BA6NHP3 402 aa18.26■□□□□ 0.51
USP9YP28-201ENST00000435142 SPDYE6P0CI01 402 aa18.26■□□□□ 0.51
USP9YP28-201ENST00000435142 SPDYE2Q495Y8 402 aa18.26■□□□□ 0.51
USP9YP28-201ENST00000435142 HAX1O00165 279 aa18.17■□□□□ 0.5
USP9YP28-201ENST00000435142 MKRN4PQ13434 485 aaPredicted RBP18.13■□□□□ 0.49
USP9YP28-201ENST00000435142 ZNF692Q9BU19 519 aaPredicted RBP18.03■□□□□ 0.48
USP9YP28-201ENST00000435142 SPDYE1Q8NFV5 336 aaPredicted RBP18.01■□□□□ 0.47
USP9YP28-201ENST00000435142 CLEC11AQ9Y240 323 aa18.01■□□□□ 0.47
USP9YP28-201ENST00000435142 SSUH2Q9Y2M2 353 aa17.97■□□□□ 0.47
USP9YP28-201ENST00000435142 PRKAR2AP13861 404 aaKnown RBP17.92■□□□□ 0.46
USP9YP28-201ENST00000435142 EVX2Q03828 476 aa17.9■□□□□ 0.46
USP9YP28-201ENST00000435142 PABPN1Q86U42 306 aaKnown RBP eCLIP17.75■□□□□ 0.43
USP9YP28-201ENST00000435142 CSRNP3Q8WYN3 585 aa17.72■□□□□ 0.43
USP9YP28-201ENST00000435142 C19orf67A6NJJ6 358 aa17.69■□□□□ 0.42
USP9YP28-201ENST00000435142 PRR29P0C7W0 189 aa17.68■□□□□ 0.42
USP9YP28-201ENST00000435142 CHADLQ6NUI6 762 aa17.66■□□□□ 0.42
USP9YP28-201ENST00000435142 GABBR2O75899 941 aa17.5■□□□□ 0.39
USP9YP28-201ENST00000435142 FARP1Q9Y4F1 1045 aaPredicted RBP17.38■□□□□ 0.37
USP9YP28-201ENST00000435142 EHMT2Q96KQ7 1210 aa17.36■□□□□ 0.37
USP9YP28-201ENST00000435142 CD44P16070 742 aaKnown RBP17.33■□□□□ 0.36
USP9YP28-201ENST00000435142 STAG3Q9UJ98 1225 aa17.22■□□□□ 0.35
USP9YP28-201ENST00000435142 LHX8Q68G74 356 aa17.19■□□□□ 0.34
USP9YP28-201ENST00000435142 SPDYE4A6NLX3 237 aa17.18■□□□□ 0.34
USP9YP28-201ENST00000435142 CLCN6P51797 869 aa17.16■□□□□ 0.34
USP9YP28-201ENST00000435142 CREBZFQ9NS37 354 aa17.16■□□□□ 0.34
USP9YP28-201ENST00000435142 POTEIP0CG38 1075 aa17.11■□□□□ 0.33
USP9YP28-201ENST00000435142 ZRANB1Q9UGI0 708 aa17.07■□□□□ 0.32
USP9YP28-201ENST00000435142 ZNF579Q8NAF0 562 aaKnown RBP17.04■□□□□ 0.32
USP9YP28-201ENST00000435142 DCBLD2Q96PD2 775 aa17■□□□□ 0.31
USP9YP28-201ENST00000435142 PAK3O75914 559 aaPredicted RBP16.88■□□□□ 0.29
USP9YP28-201ENST00000435142 GALR2O43603 387 aaPredicted RBP16.86■□□□□ 0.29
USP9YP28-201ENST00000435142 NPM1P06748 294 aaKnown RBP eCLIP16.86■□□□□ 0.29
USP9YP28-201ENST00000435142 MNX1P50219 401 aaPredicted RBP16.83■□□□□ 0.28
USP9YP28-201ENST00000435142 PHF12Q96QT6 1004 aa16.79■□□□□ 0.28
USP9YP28-201ENST00000435142 PROM2Q8N271 834 aa16.69■□□□□ 0.26
USP9YP28-201ENST00000435142 PELP1Q8IZL8 1130 aaKnown RBP16.56■□□□□ 0.24
USP9YP28-201ENST00000435142 POTEB2H3BUK9 544 aa16.55■□□□□ 0.24
USP9YP28-201ENST00000435142 MS4A3Q96HJ5 214 aa16.55■□□□□ 0.24
USP9YP28-201ENST00000435142 TSPYL2Q9H2G4 693 aaPredicted RBP16.55■□□□□ 0.24
USP9YP28-201ENST00000435142 OTUD5Q96G74 571 aa16.53■□□□□ 0.24
USP9YP28-201ENST00000435142 ASTLQ6HA08 431 aaPredicted RBP16.49■□□□□ 0.23
USP9YP28-201ENST00000435142 ATMINO43313 823 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms