Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AK4P3-201ENST00000418260 669 ntBASIC19.13■□□□□ 0.65
CBX4O00257 AC117947.1-201ENST00000427448 529 ntBASIC19.13■□□□□ 0.65
CBX4O00257 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CBX4O00257 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.13■□□□□ 0.65
CBX4O00257 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.13■□□□□ 0.65
CBX4O00257 AC140113.3-201ENST00000605663 199 ntBASIC19.13■□□□□ 0.65
CBX4O00257 AL023973.1-201ENST00000624619 620 ntBASIC19.13■□□□□ 0.65
CBX4O00257 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
CBX4O00257 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CBX4O00257 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.13■□□□□ 0.65
CBX4O00257 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.13■□□□□ 0.65
CBX4O00257 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.13■□□□□ 0.65
CBX4O00257 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CBX4O00257 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CBX4O00257 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CBX4O00257 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CBX4O00257 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.12■□□□□ 0.65
CBX4O00257 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CBX4O00257 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.12■□□□□ 0.65
CBX4O00257 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.12■□□□□ 0.65
CBX4O00257 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CBX4O00257 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.12■□□□□ 0.65
CBX4O00257 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.12■□□□□ 0.65
CBX4O00257 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.12■□□□□ 0.65
CBX4O00257 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.12■□□□□ 0.65
CBX4O00257 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.12■□□□□ 0.65
CBX4O00257 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CBX4O00257 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.12■□□□□ 0.65
CBX4O00257 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 YBX1P2-201ENST00000489612 999 ntBASIC19.12■□□□□ 0.65
CBX4O00257 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.12■□□□□ 0.65
CBX4O00257 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.12■□□□□ 0.65
CBX4O00257 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 AC068587.9-201ENST00000641814 219 ntBASIC19.12■□□□□ 0.65
CBX4O00257 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CBX4O00257 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CBX4O00257 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CBX4O00257 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CBX4O00257 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.11■□□□□ 0.65
CBX4O00257 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CBX4O00257 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CBX4O00257 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CBX4O00257 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.11■□□□□ 0.65
CBX4O00257 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CBX4O00257 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
CBX4O00257 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.11■□□□□ 0.65
CBX4O00257 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.11■□□□□ 0.65
CBX4O00257 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.11■□□□□ 0.65
CBX4O00257 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.11■□□□□ 0.65
CBX4O00257 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.11■□□□□ 0.65
CBX4O00257 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.11■□□□□ 0.65
CBX4O00257 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CBX4O00257 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CBX4O00257 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CBX4O00257 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CBX4O00257 HEIH-201ENST00000623091 1652 ntBASIC19.11■□□□□ 0.65
CBX4O00257 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CBX4O00257 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CBX4O00257 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.1■□□□□ 0.65
CBX4O00257 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CBX4O00257 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CBX4O00257 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.1■□□□□ 0.65
CBX4O00257 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 AP000523.1-201ENST00000398242 1049 ntBASIC19.1■□□□□ 0.65
CBX4O00257 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.1■□□□□ 0.65
CBX4O00257 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.1■□□□□ 0.65
CBX4O00257 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.1■□□□□ 0.65
CBX4O00257 NEK4P2-201ENST00000580004 1012 ntBASIC19.1■□□□□ 0.65
CBX4O00257 AC011558.1-201ENST00000623459 338 ntBASIC19.1■□□□□ 0.65
CBX4O00257 AL031432.5-201ENST00000641059 760 ntBASIC19.1■□□□□ 0.65
CBX4O00257 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
CBX4O00257 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.1■□□□□ 0.65
CBX4O00257 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.1■□□□□ 0.65
CBX4O00257 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
CBX4O00257 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CBX4O00257 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms