Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 AK1-201ENST00000223836 736 ntTSL 3 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 PARP1-202ENST00000366792 553 ntTSL 3 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 RHOF-204ENST00000537265 699 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 AC011270.2-201ENST00000624293 2550 ntBASIC13.31□□□□□ -0.28
LINC01549A6NIU2 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC01549A6NIU2 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 NARF-204ENST00000390006 1766 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 AC138028.4-201ENST00000564984 1845 ntBASIC13.3□□□□□ -0.28
LINC01549A6NIU2 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 AC134043.2-201ENST00000624206 2238 ntBASIC13.3□□□□□ -0.28
LINC01549A6NIU2 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 YBX1P10-201ENST00000444752 975 ntBASIC13.3□□□□□ -0.28
LINC01549A6NIU2 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 GALNS-213ENST00000569433 723 ntTSL 3 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 CYP2T3P-201ENST00000601990 817 ntBASIC13.3□□□□□ -0.28
LINC01549A6NIU2 UBE2DNL-204ENST00000602536 740 ntBASIC13.3□□□□□ -0.28
LINC01549A6NIU2 AC016405.3-201ENST00000607710 860 ntBASIC13.3□□□□□ -0.28
LINC01549A6NIU2 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 AC141586.5-201ENST00000624546 2050 ntBASIC13.3□□□□□ -0.28
LINC01549A6NIU2 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC13.3□□□□□ -0.28
LINC01549A6NIU2 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC01549A6NIU2 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms