Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM49BA6NDI0 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM49BA6NDI0 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM49BA6NDI0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.66■□□□□ 0.9
TRIM49BA6NDI0 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM49BA6NDI0 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM49BA6NDI0 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM49BA6NDI0 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM49BA6NDI0 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM49BA6NDI0 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 AL133373.2-201ENST00000623187 2828 ntBASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 AP000692.2-201ENST00000608391 879 ntBASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM49BA6NDI0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM49BA6NDI0 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM49BA6NDI0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM49BA6NDI0 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM49BA6NDI0 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM49BA6NDI0 FSCN1P1-201ENST00000568912 1481 ntBASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 AC113410.3-201ENST00000623366 203 ntBASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM49BA6NDI0 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 RPS2P55-201ENST00000397318 883 ntBASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 AC107956.1-201ENST00000494359 873 ntBASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM49BA6NDI0 AC005332.8-201ENST00000622750 2735 ntBASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 AC008556.1-201ENST00000610908 2040 ntBASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM49BA6NDI0 ABHD17AP1-201ENST00000358206 933 ntBASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms