Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 AL390719.1-204ENST00000412397 1219 ntBASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 AC073210.2-201ENST00000430369 194 ntBASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.67■□□□□ 0.58
USH1CQ9Y6N9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 AC099398.1-201ENST00000567919 2776 ntBASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
USH1CQ9Y6N9 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
USH1CQ9Y6N9 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms