Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 AC074051.2-201ENST00000565115 352 ntBASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 AC117500.6-201ENST00000624871 588 ntBASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHGA1Q9Y5H4 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 AL157384.1-201ENST00000445995 2473 ntBASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 MIR3180-4-201ENST00000582223 153 ntBASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 BX640515.1-201ENST00000617215 977 ntBASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 AC233702.3-201ENST00000578656 1387 ntBASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHGA1Q9Y5H4 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 AC073314.1-201ENST00000568729 2216 ntBASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 AC079776.4-201ENST00000511039 504 ntBASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 AC138894.3-201ENST00000603787 634 ntBASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 AC064862.7-201ENST00000604520 867 ntBASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHGA1Q9Y5H4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 KRT16P4-201ENST00000453883 522 ntBASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHGA1Q9Y5H4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms