Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL445675.2-201ENST00000620291 557 ntBASIC15.19■□□□□ 0.02
FOXA2Q9Y261 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 AC007613.1-201ENST00000572811 2597 ntBASIC15.19■□□□□ 0.02
FOXA2Q9Y261 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA2Q9Y261 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 KRT16P1-201ENST00000399124 1418 ntBASIC15.18■□□□□ 0.02
FOXA2Q9Y261 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AC073592.3-201ENST00000625118 1834 ntBASIC15.18■□□□□ 0.02
FOXA2Q9Y261 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AC131212.4-201ENST00000623606 975 ntBASIC15.18■□□□□ 0.02
FOXA2Q9Y261 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 BCL2-203ENST00000589955 5011 ntBASIC15.18■□□□□ 0.02
FOXA2Q9Y261 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
FOXA2Q9Y261 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 MDFI-202ENST00000373050 809 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 DET1-205ENST00000558413 583 ntTSL 4 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 CR392000.1-201ENST00000624770 1228 ntBASIC15.17■□□□□ 0.02
FOXA2Q9Y261 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 AL049637.2-201ENST00000641778 930 ntBASIC15.17■□□□□ 0.02
FOXA2Q9Y261 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
FOXA2Q9Y261 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms