Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 TSPY22P-201ENST00000427496 604 ntBASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 AP002383.4-201ENST00000442518 975 ntBASIC19.29■□□□□ 0.68
TDP1Q9NUW8 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 MIR3180-1-201ENST00000580374 94 ntBASIC19.29■□□□□ 0.68
TDP1Q9NUW8 MIR3180-3-201ENST00000584616 94 ntBASIC19.29■□□□□ 0.68
TDP1Q9NUW8 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TDP1Q9NUW8 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 TPM4P1-201ENST00000436100 807 ntBASIC19.28■□□□□ 0.68
TDP1Q9NUW8 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 MIR3180-4-201ENST00000582223 153 ntBASIC19.28■□□□□ 0.68
TDP1Q9NUW8 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 AC068587.9-201ENST00000641814 219 ntBASIC19.28■□□□□ 0.68
TDP1Q9NUW8 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.28■□□□□ 0.68
TDP1Q9NUW8 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 CHCHD2P8-201ENST00000429873 447 ntBASIC19.27■□□□□ 0.68
TDP1Q9NUW8 PVRIG2P-201ENST00000435460 978 ntBASIC19.27■□□□□ 0.68
TDP1Q9NUW8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 PRELID1P1-202ENST00000567272 903 ntBASIC19.27■□□□□ 0.68
TDP1Q9NUW8 RNF126P1-202ENST00000569893 925 ntBASIC19.27■□□□□ 0.68
TDP1Q9NUW8 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 AP002414.4-201ENST00000589764 1148 ntBASIC19.27■□□□□ 0.68
TDP1Q9NUW8 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 AL691432.3-201ENST00000621860 400 ntBASIC19.27■□□□□ 0.68
TDP1Q9NUW8 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TDP1Q9NUW8 AL032819.2-201ENST00000624543 2162 ntBASIC19.27■□□□□ 0.68
TDP1Q9NUW8 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TDP1Q9NUW8 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.27■□□□□ 0.67
TDP1Q9NUW8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.27■□□□□ 0.67
TDP1Q9NUW8 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TDP1Q9NUW8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms