Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
USHBP1Q8N6Y0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
USHBP1Q8N6Y0 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
USHBP1Q8N6Y0 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
USHBP1Q8N6Y0 AC009078.2-202ENST00000463353 338 ntBASIC24.73■■□□□ 1.55
USHBP1Q8N6Y0 FOSL1P1-201ENST00000511041 816 ntBASIC24.73■■□□□ 1.55
USHBP1Q8N6Y0 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 NUS1P1-201ENST00000446295 882 ntBASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 NAT14-202ENST00000587400 416 ntTSL 5 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 POLI-202ENST00000406285 2030 ntTSL 2 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 AFG3L1P-217ENST00000557444 2447 ntBASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
USHBP1Q8N6Y0 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 TSPY19P-201ENST00000418461 509 ntBASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 TSPY18P-201ENST00000441642 509 ntBASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 AL031008.1-201ENST00000619963 541 ntBASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
USHBP1Q8N6Y0 PBK-203ENST00000522944 1499 ntTSL 2 BASIC24.7■■□□□ 1.55
USHBP1Q8N6Y0 KRT8P10-201ENST00000450021 1447 ntBASIC24.7■■□□□ 1.55
USHBP1Q8N6Y0 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 AL390719.2-201ENST00000606993 987 ntBASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 BID-204ENST00000399767 2129 ntTSL 2 BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.54
USHBP1Q8N6Y0 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 AC079781.3-201ENST00000449110 356 ntBASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 AP003733.1-201ENST00000491725 852 ntBASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
USHBP1Q8N6Y0 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 KRT17P6-201ENST00000453795 1220 ntBASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
USHBP1Q8N6Y0 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms