Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC65Q8IXS2 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 AL023284.2-201ENST00000405850 579 ntBASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 SLC25A1P2-201ENST00000430693 912 ntBASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 WIZP1-201ENST00000531444 2299 ntBASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 AC020763.4-201ENST00000623414 4170 ntBASIC20.8■□□□□ 0.92
CCDC65Q8IXS2 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 AL357033.4-201ENST00000617703 1807 ntBASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC65Q8IXS2 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 GPAT2P1-201ENST00000444924 1672 ntBASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 MCCD1P1-208ENST00000445732 328 ntBASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 AL023803.3-201ENST00000615559 522 ntBASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC65Q8IXS2 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 AC008556.1-201ENST00000610908 2040 ntBASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms