Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 AC023824.1-201ENST00000562945 2975 ntBASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CCDC28AQ8IWP9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 AC055733.4-201ENST00000638462 1354 ntBASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 PXK-203ENST00000383715 1756 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 TCAF2P1-201ENST00000291129 2421 ntBASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms